CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	CDX89437	AT4G25200.1	21798944
AT5G02050.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029082.1-P	Field mustard	plastid	61.79	92.68
CDY38740	Canola	plastid	91.06	92.56
CDY47065	Canola	plastid	42.68	74.47
CDY38743	Canola	cytosol	43.09	69.28
CDY70180	Canola	plastid	60.57	57.53
CDY43065	Canola	plastid	59.76	56.11
CDY43064	Canola	plastid	54.88	54.88
CDY70179	Canola	plastid	54.06	54.06
CDX80800	Canola	mitochondrion	47.97	45.56
CDY55117	Canola	mitochondrion, plastid	46.34	44.02
AT5G02050.1	Thale cress	mitochondrion, plastid	44.72	41.2
KRH49169	Soybean	endoplasmic reticulum	39.43	38.34
KRH00042	Soybean	nucleus	39.02	37.8
HORVU0Hr1G006190.1	Barley	cytosol	26.83	37.08
HORVU3Hr1G011490.1	Barley	cytosol	17.89	33.08
Os01t0143300-01	Rice	mitochondrion	34.96	32.58
TraesCS3A01G059200.1	Wheat	mitochondrion	33.74	32.05
TraesCS3B01G071700.1	Wheat	mitochondrion	33.33	31.66
GSMUA_Achr4P16890_001	Banana	mitochondrion	33.74	31.56
HORVU3Hr1G011460.1	Barley	mitochondrion	32.52	31.5
CDY20481	Canola	mitochondrion	31.71	31.45
CDX74831	Canola	mitochondrion	31.71	31.33
Zm00001d039883_P001	Maize	mitochondrion	32.11	31.23
EES00334	Sorghum	mitochondrion, plastid	33.74	31.2
CDY35045	Canola	mitochondrion	29.67	30.17
CDX70103	Canola	mitochondrion	30.89	29.8
CDY65769	Canola	mitochondrion, plastid	31.3	29.73
CDY33373	Canola	mitochondrion	28.86	29.22
CDX76083	Canola	mitochondrion	30.49	28.85
CDX98894	Canola	mitochondrion	30.08	28.68
CDY11346	Canola	mitochondrion	30.08	28.35
CDY39948	Canola	mitochondrion	26.83	27.27
Os01t0143700-00	Rice	mitochondrion	28.46	27.03
CDX80981	Canola	mitochondrion	28.46	27.03
CDX87337	Canola	mitochondrion	26.02	26.45
PGSC0003DMT400022948	Potato	mitochondrion	26.83	26.29
Solyc09g011250.2.1	Tomato	mitochondrion	26.02	25.5
CDX68804	Canola	cytosol	12.2	25.21
EES00333	Sorghum	plastid	27.24	24.63
CDY13466	Canola	mitochondrion	24.39	24.49
CDX72338	Canola	plastid	24.8	24.4
TraesCS3A01G059600.1	Wheat	plastid	26.02	23.53
HORVU1Hr1G072660.2	Barley	mitochondrion	24.39	23.44
TraesCS3B01G072200.1	Wheat	plastid	25.61	23.33
Os01t0143800-01	Rice	plastid	26.02	23.27
Zm00001d008610_P001	Maize	plastid	25.61	22.99
TraesCS3D01G059900.1	Wheat	plastid	25.2	22.96
HORVU3Hr1G011560.1	Barley	plastid	26.02	22.22
EES19636	Sorghum	mitochondrion	22.76	21.88
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	24.8	21.79
TraesCS1D01G281100.1	Wheat	mitochondrion	21.95	21.43
TraesCS3D01G059800.1	Wheat	mitochondrion	25.2	21.09
TraesCS3D01G059700.1	Wheat	mitochondrion	23.98	21.0
TraesCS3B01G071900.1	Wheat	mitochondrion	26.42	20.97
Os05t0456000-01	Rice	mitochondrion	21.95	20.93
HORVU3Hr1G085260.1	Barley	cytosol	13.41	20.89
TraesCS3B01G072000.1	Wheat	mitochondrion	22.76	20.74
TraesCS1B01G291000.1	Wheat	mitochondrion	21.54	20.38
TraesCS3D01G059500.1	Wheat	mitochondrion	25.2	20.0
TraesCS3D01G059600.1	Wheat	mitochondrion	23.17	19.66
HORVU3Hr1G011510.1	Barley	plastid	22.76	13.83
HORVU3Hr1G011580.1	Barley	mitochondrion	7.32	10.98

Protein Annotations

EnsemblPlants:CDY47064	EnsemblPlantsGene:GSBRNA2T00086678001	Gene3D:3.10.280.10	GO:A0A078ICL3	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:CDY47064	ProteinID:CDY47064.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0004EE6AD2	UniProt:A0A078ICL3	MapMan:35.1	:

Description

BnaA03g12340DBnaA03g12340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICL3]

Coordinates

chrLK032696:-:26189..27253

Molecular Weight (calculated)

27710.6 Da

IEP (calculated)

4.192

GRAVY (calculated)

-0.192

Length

246 amino acids

Sequence
(BLAST)

001: MSLFCRVSVA STLPFRAASS PPASLQTGTQ RVTFGGSHQC SRLISFSSIS AVRAITPSSN LLSLLESEIE SSVVDEDAPD NEELPEWFTF QIIDLPTERI
101: VRLIRKFDDE TIIVYIDPSA HLFDEQPKLP QDDEELLAGI PMVVDVSKDD DGLCLEFGVN AFADEIVIDS LVVQQPHEPK YPYQGPDFDD LDENLQRAFH
201: KFLEIRGINL TLTNFLADYM VNKDKRSHLQ WLKDVKSFVL TSENSQ

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.