CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	KRH23958	AT4G25200.1	21798944
AT5G02050.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00042	Soybean	nucleus	94.86	94.49
HORVU0Hr1G006190.1	Barley	cytosol	33.99	48.31
CDY38743	Canola	cytosol	28.85	47.71
AT5G02050.1	Thale cress	mitochondrion, plastid	49.8	47.19
CDX80800	Canola	mitochondrion	47.83	46.72
Bra005705.1-P	Field mustard	mitochondrion, plastid	47.43	46.33
CDY55117	Canola	mitochondrion, plastid	47.43	46.33
KRH15056	Soybean	mitochondrion	45.45	45.45
GSMUA_Achr4P16890_001	Banana	mitochondrion	47.04	45.25
KRH73081	Soybean	mitochondrion	43.87	43.87
HORVU3Hr1G011460.1	Barley	mitochondrion	43.87	43.7
TraesCS3A01G059200.1	Wheat	mitochondrion	44.66	43.63
TraesCS3B01G071700.1	Wheat	mitochondrion	44.66	43.63
Os01t0143300-01	Rice	mitochondrion	45.06	43.18
Bra029081.1-P	Field mustard	plastid	37.55	41.48
CDY38740	Canola	plastid	38.34	40.08
Zm00001d039883_P001	Maize	mitochondrion	39.53	39.53
CDY47064	Canola	plastid	38.34	39.43
EES00334	Sorghum	mitochondrion, plastid	41.11	39.1
HORVU3Hr1G011490.1	Barley	cytosol	20.55	39.1
PGSC0003DMT400022948	Potato	mitochondrion	38.74	39.04
Solyc09g011250.2.1	Tomato	mitochondrion	38.34	38.65
CDY47065	Canola	plastid	20.55	36.88
Bra029083.1-P	Field mustard	mitochondrion	27.27	36.32
CDY70180	Canola	plastid	36.76	35.91
Os01t0143700-00	Rice	mitochondrion	36.76	35.91
Bra029050.1-P	Field mustard	plastid	33.99	34.96
CDY43064	Canola	plastid	33.99	34.96
CDY70179	Canola	plastid	33.99	34.96
CDY43065	Canola	plastid	35.57	34.35
Bra029051.1-P	Field mustard	plastid	35.57	34.35
HORVU3Hr1G085260.1	Barley	cytosol	19.37	31.01
TraesCS3A01G059600.1	Wheat	plastid	32.81	30.51
EES00333	Sorghum	plastid	32.81	30.51
TraesCS3D01G059900.1	Wheat	plastid	32.41	30.37
EES19636	Sorghum	mitochondrion	30.04	29.69
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	32.81	29.64
TraesCS3B01G072200.1	Wheat	plastid	31.62	29.63
Os01t0143800-01	Rice	plastid	32.02	29.45
Zm00001d008610_P001	Maize	plastid	31.62	29.2
Os05t0456000-01	Rice	mitochondrion	29.25	28.68
Bra029082.1-P	Field mustard	plastid	18.58	28.66
TraesCS3D01G059600.1	Wheat	mitochondrion	32.41	28.28
TraesCS3D01G059800.1	Wheat	mitochondrion	32.81	28.23
TraesCS3B01G072000.1	Wheat	mitochondrion	30.04	28.15
KRH47379	Soybean	mitochondrion	22.92	28.02
KRH44530	Soybean	mitochondrion	25.3	27.95
HORVU3Hr1G011560.1	Barley	plastid	31.62	27.78
HORVU1Hr1G072660.2	Barley	mitochondrion	28.06	27.73
TraesCS3D01G059700.1	Wheat	mitochondrion	30.43	27.4
TraesCS1D01G281100.1	Wheat	mitochondrion	26.88	26.98
TraesCS1B01G291000.1	Wheat	mitochondrion	26.88	26.15
TraesCS3B01G071900.1	Wheat	mitochondrion	31.62	25.81
KRH15786	Soybean	mitochondrion	23.72	25.32
KRH05267	Soybean	mitochondrion	23.32	25.21
TraesCS3D01G059500.1	Wheat	mitochondrion	30.43	24.84
HORVU3Hr1G011580.1	Barley	mitochondrion	12.65	19.51
HORVU3Hr1G011510.1	Barley	plastid	26.88	16.79

Protein Annotations

EntrezGene:100803348	Gene3D:3.10.280.10	MapMan:35.1	EMBL:ACUP02004335	EnsemblPlantsGene:GLYMA_07G137100	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	UniProt:I1KK35
InterPro:IPR036561	EnsemblPlants:KRH49169	ProteinID:KRH49169	ProteinID:KRH49169.1	InterPro:MAM33	InterPro:MAM33_sf
PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	SUPFAM:SSF54529	UniParc:UPI0001BA820B	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:16274591..16277530

Molecular Weight (calculated)

28522.4 Da

IEP (calculated)

4.330

GRAVY (calculated)

-0.445

Length

253 amino acids

Sequence
(BLAST)

001: MAMYAMLRRV SSAVLPQLAR RTAMASSSSR TFHIALSVLR RETATTTIAP SLRFANAFAT KSSADEYLAQ VLQSEIQCAL EDDHAHHQVE VPVDFPFDIE
101: DNPGERTIQL KGKFGDETIK VQVDIPNVAP GEENEDDENG DNEKNDSESS IPLVVSVFKE NGVSLEFGVT AFPDEISIDS LSIKQCEESE DQLAYEGPEF
201: IDLDENLQKA FHKYLEIRGI KPSTTNFLQE YMFAKDNKEY LMWLKNLKNF VEK

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.