Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0758000-01 | |
| Os06t0219500-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02050.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
| AT5G02050.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00333 | Sorghum | plastid | 73.09 | 73.9 |
| Zm00001d008610_P001 | Maize | plastid | 69.82 | 70.07 |
| TraesCS3A01G059600.1 | Wheat | plastid | 65.82 | 66.54 |
| TraesCS3D01G059900.1 | Wheat | plastid | 64.0 | 65.19 |
| TraesCS3B01G072200.1 | Wheat | plastid | 64.0 | 65.19 |
| HORVU3Hr1G011560.1 | Barley | plastid | 65.09 | 62.15 |
| Os01t0143300-01 | Rice | mitochondrion | 38.55 | 40.15 |
| GSMUA_Achr4P16890_001 | Banana | mitochondrion | 36.36 | 38.02 |
| Solyc03g079930.2.1 | Tomato | plastid | 34.55 | 36.82 |
| KRH15056 | Soybean | mitochondrion | 33.45 | 36.36 |
| KRH73081 | Soybean | mitochondrion | 32.73 | 35.57 |
| PGSC0003DMT400055876 | Potato | mitochondrion, plastid | 32.36 | 34.9 |
| Bra005013.1-P | Field mustard | mitochondrion | 31.27 | 34.68 |
| VIT_13s0019g02350.t01 | Wine grape | mitochondrion | 31.64 | 34.39 |
| CDX74831 | Canola | mitochondrion | 30.91 | 34.14 |
| CDX70103 | Canola | mitochondrion | 31.64 | 34.12 |
| CDX98894 | Canola | mitochondrion | 32.0 | 34.11 |
| CDY20481 | Canola | mitochondrion | 30.55 | 33.87 |
| CDY11346 | Canola | mitochondrion | 32.0 | 33.72 |
| Os01t0143700-00 | Rice | mitochondrion | 31.64 | 33.59 |
| PGSC0003DMT400022948 | Potato | mitochondrion | 30.55 | 33.47 |
| AT5G05990.1 | Thale cress | mitochondrion | 31.27 | 33.2 |
| Bra009157.1-P | Field mustard | mitochondrion | 30.18 | 33.07 |
| Bra005873.1-P | Field mustard | mitochondrion | 31.27 | 32.95 |
| AT2G39795.1 | Thale cress | mitochondrion | 29.82 | 32.8 |
| KRH49169 | Soybean | endoplasmic reticulum | 29.45 | 32.02 |
| KRH00042 | Soybean | nucleus | 29.45 | 31.89 |
| CDX80981 | Canola | mitochondrion | 29.82 | 31.66 |
| Solyc09g011250.2.1 | Tomato | mitochondrion | 28.73 | 31.47 |
| AT3G55605.1 | Thale cress | mitochondrion | 28.73 | 30.62 |
| AT5G02050.1 | Thale cress | mitochondrion, plastid | 29.45 | 30.34 |
| CDX76083 | Canola | mitochondrion | 28.36 | 30.0 |
| Bra014733.1-P | Field mustard | mitochondrion | 28.0 | 29.73 |
| CDY38743 | Canola | cytosol | 16.36 | 29.41 |
| CDY65769 | Canola | mitochondrion, plastid | 27.27 | 28.96 |
| Bra005705.1-P | Field mustard | mitochondrion, plastid | 26.91 | 28.57 |
| CDY55117 | Canola | mitochondrion, plastid | 26.91 | 28.57 |
| CDX80800 | Canola | mitochondrion | 26.91 | 28.57 |
| Bra029083.1-P | Field mustard | mitochondrion | 19.27 | 27.89 |
| AT2G39790.1 | Thale cress | mitochondrion, plastid | 23.64 | 27.08 |
| CDY38740 | Canola | plastid | 22.91 | 26.03 |
| Os06t0326500-01 | Rice | mitochondrion | 25.45 | 26.02 |
| CDY47064 | Canola | plastid | 23.27 | 26.02 |
| CDY70179 | Canola | plastid | 22.91 | 25.61 |
| CDY70180 | Canola | plastid | 23.64 | 25.1 |
| Bra029081.1-P | Field mustard | plastid | 20.73 | 24.89 |
| Os05t0456000-01 | Rice | mitochondrion | 23.27 | 24.81 |
| Bra029050.1-P | Field mustard | plastid | 22.18 | 24.8 |
| CDY43064 | Canola | plastid | 22.18 | 24.8 |
| Bra029051.1-P | Field mustard | plastid | 23.27 | 24.43 |
| CDY43065 | Canola | plastid | 23.27 | 24.43 |
| Os09t0557400-01 | Rice | mitochondrion | 17.09 | 20.98 |
| Os08t0439900-01 | Rice | mitochondrion | 17.45 | 20.6 |
| CDY47065 | Canola | plastid | 10.18 | 19.86 |
| Bra029082.1-P | Field mustard | plastid | 10.18 | 17.07 |
Protein Annotations
| Gene3D:3.10.280.10 | MapMan:35.1 | EntrezGene:4325462 | EMBL:AK104561 | EMBL:AK104721 | ProteinID:BAB16470.1 |
| ProteinID:BAB40125.1 | ProteinID:BAF03914.1 | ProteinID:BAS70346.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005759 | InterPro:IPR036561 | InterPro:MAM33 | InterPro:MAM33_sf |
| EnsemblPlantsGene:Os01g0143800 | EnsemblPlants:Os01t0143800-01 | PFAM:PF02330 | PANTHER:PTHR10826 | PANTHER:PTHR10826:SF15 | UniProt:Q9FU74 |
| SUPFAM:SSF54529 | SignalP:SignalP-noTM | UniParc:UPI00000AAD7C | RefSeq:XP_015612217.1 | SEG:seg | : |
Description
Mitochondrial glycoprotein family protein. (Os01t0143800-01);Mitochondrial glycoprotein family protein. (Os01t0143800-03)
Coordinates
chr1:-:2374541..2376761
Molecular Weight (calculated)
29808.9 Da
IEP (calculated)
4.193
GRAVY (calculated)
-0.453
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVSAAAAA TAAAAFLPGV SSASRAGTPL LSLQRQPLAG SLRAAAQGSS ASSGQVVMES KVKAKKKKGS GAGNLPGAID AEIREAQDYL AIDEQEPVPE
101: NFPFEILDEE GMSVVILKRD YKDEKIEVIV SMPNLEGGPE FDDEEAEGEG KNASKDDEDE EEDESAGDSS VSLKVTVSKG SGPKLEFTCT AFREEITIDD
201: MLIVENAATE GDEKFPYEGP EFTELPVNVQ KGLFKYLEQR GITLPTTNYM HDYMVTKQTK EYVGWMTKLK DFVRQ
101: NFPFEILDEE GMSVVILKRD YKDEKIEVIV SMPNLEGGPE FDDEEAEGEG KNASKDDEDE EEDESAGDSS VSLKVTVSKG SGPKLEFTCT AFREEITIDD
201: MLIVENAATE GDEKFPYEGP EFTELPVNVQ KGLFKYLEQR GITLPTTNYM HDYMVTKQTK EYVGWMTKLK DFVRQ
001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE
Arabidopsis Description
At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.