CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	EER89430	AT4G25200.1	21798944
AT5G02050.1	EER89431	AT4G25200.1	21798944
AT5G02050.1	KXG19616	AT4G25200.1	21798944
AT5G02050.1	OQU75612	AT4G25200.1	21798944
AT5G02050.1	OQU75930	AT4G25200.1	21798944
AT5G02050.1	OQU76071	AT4G25200.1	21798944
AT5G02050.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008610_P001	Maize	plastid	86.03	85.4
Os01t0143800-01	Rice	plastid	73.9	73.09
TraesCS3A01G059600.1	Wheat	plastid	63.6	63.6
TraesCS3D01G059900.1	Wheat	plastid	62.87	63.33
TraesCS3B01G072200.1	Wheat	plastid	62.5	62.96
HORVU3Hr1G011560.1	Barley	plastid	62.87	59.38
Solyc03g079930.2.1	Tomato	plastid	35.29	37.21
GSMUA_Achr4P16890_001	Banana	mitochondrion	35.29	36.5
EES00334	Sorghum	mitochondrion, plastid	35.66	36.47
VIT_13s0019g02350.t01	Wine grape	mitochondrion	33.82	36.36
PGSC0003DMT400055876	Potato	mitochondrion, plastid	33.82	36.08
KRH15056	Soybean	mitochondrion	33.09	35.57
KRH73081	Soybean	mitochondrion	31.99	34.39
Bra005013.1-P	Field mustard	mitochondrion	31.25	34.27
CDY20481	Canola	mitochondrion	31.25	34.27
CDX70103	Canola	mitochondrion	31.99	34.12
AT2G39795.1	Thale cress	mitochondrion	31.25	34.0
CDX74831	Canola	mitochondrion	30.88	33.73
CDX98894	Canola	mitochondrion	31.99	33.72
Bra009157.1-P	Field mustard	mitochondrion	30.88	33.47
PGSC0003DMT400022948	Potato	mitochondrion	30.51	33.07
AT3G55605.1	Thale cress	mitochondrion	31.25	32.95
KRH49169	Soybean	endoplasmic reticulum	30.51	32.81
KRH00042	Soybean	nucleus	30.51	32.68
AT5G05990.1	Thale cress	mitochondrion	30.88	32.43
CDY38743	Canola	cytosol	17.65	31.37
Solyc09g011250.2.1	Tomato	mitochondrion	28.68	31.08
Bra005873.1-P	Field mustard	mitochondrion	29.78	31.03
CDY11346	Canola	mitochondrion	29.78	31.03
Bra014733.1-P	Field mustard	mitochondrion	28.68	30.12
CDX76083	Canola	mitochondrion	28.68	30.0
CDX80981	Canola	mitochondrion	28.31	29.73
CDY65769	Canola	mitochondrion, plastid	27.94	29.34
CDY38740	Canola	plastid	25.37	28.51
CDY70179	Canola	plastid	25.74	28.46
Bra005705.1-P	Field mustard	mitochondrion, plastid	26.84	28.19
CDX80800	Canola	mitochondrion	26.84	28.19
CDY55117	Canola	mitochondrion, plastid	26.84	28.19
AT5G02050.1	Thale cress	mitochondrion, plastid	27.57	28.09
Bra029083.1-P	Field mustard	mitochondrion	19.49	27.89
Bra029081.1-P	Field mustard	plastid	23.16	27.51
CDY70180	Canola	plastid	26.1	27.41
Bra029050.1-P	Field mustard	plastid	24.63	27.24
CDY47064	Canola	plastid	24.63	27.24
CDY43064	Canola	plastid	24.63	27.24
EER88336	Sorghum	mitochondrion	26.1	26.79
Bra029051.1-P	Field mustard	plastid	25.74	26.72
CDY43065	Canola	plastid	25.74	26.72
AT2G39790.1	Thale cress	mitochondrion, plastid	23.16	26.25
EES19636	Sorghum	mitochondrion	23.9	25.39
EES15053	Sorghum	mitochondrion	19.12	22.51
CDY47065	Canola	plastid	11.4	21.99
KXG36169	Sorghum	mitochondrion	18.01	20.76
Bra029082.1-P	Field mustard	plastid	11.4	18.9

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	EntrezGene:8073317	UniProt:C5XQ31	EnsemblPlants:EES00333	ProteinID:EES00333
ProteinID:EES00333.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826
PANTHER:PTHR10826:SF15	EnsemblPlantsGene:SORBI_3003G075100	SUPFAM:SSF54529	unigene:Sbi.1308	SignalP:SignalP-noTM	UniParc:UPI0001A84774
RefSeq:XP_002455213.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:6374983..6378696

Molecular Weight (calculated)

29757.6 Da

IEP (calculated)

4.148

GRAVY (calculated)

-0.546

Length

272 amino acids

Sequence
(BLAST)

001: MAFVSATAAA STTLFLSVLS PARSAGACVC SQARKPSTAP LHAAKGPNSA PVVLESKAKG KKKKGSGAGN LAGALDVEIR EAQEYLDSDE QEPLPDNFPF
101: EIIDEDGMSV VILRRDYKDE KIEVTVSMPN LEGGPEFDDE DGEGDGESAG KDDEEAEEED ESAGDSSISL KVVVSKDSGP KLEFTCTAFR EEITIDDMLI
201: VEKTDDDGEE KFPYEGPEFT ELPVNVQKGL FKYLEQRGVT LSATNYMHDY MVTKQAQEYI RWMTKLKDFV KQ

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.