CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	KRH23958	AT4G25200.1	21798944
AT5G02050.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49169	Soybean	endoplasmic reticulum	94.49	94.86
HORVU0Hr1G006190.1	Barley	cytosol	33.46	47.75
CDY38743	Canola	cytosol	27.95	46.41
AT5G02050.1	Thale cress	mitochondrion, plastid	48.43	46.07
CDX80800	Canola	mitochondrion	46.85	45.95
KRH15056	Soybean	mitochondrion	45.67	45.85
GSMUA_Achr4P16890_001	Banana	mitochondrion	47.24	45.63
Bra005705.1-P	Field mustard	mitochondrion, plastid	46.46	45.56
CDY55117	Canola	mitochondrion, plastid	46.46	45.56
KRH73081	Soybean	mitochondrion	44.09	44.27
HORVU3Hr1G011460.1	Barley	mitochondrion	43.7	43.7
TraesCS3B01G071700.1	Wheat	mitochondrion	44.49	43.63
TraesCS3A01G059200.1	Wheat	mitochondrion	44.49	43.63
Os01t0143300-01	Rice	mitochondrion	44.88	43.18
Bra029081.1-P	Field mustard	plastid	36.61	40.61
Zm00001d039883_P001	Maize	mitochondrion	39.76	39.92
CDY38740	Canola	plastid	37.8	39.67
EES00334	Sorghum	mitochondrion, plastid	41.34	39.47
HORVU3Hr1G011490.1	Barley	cytosol	20.47	39.1
PGSC0003DMT400022948	Potato	mitochondrion	38.58	39.04
CDY47064	Canola	plastid	37.8	39.02
Solyc09g011250.2.1	Tomato	mitochondrion	38.19	38.65
CDY47065	Canola	plastid	20.47	36.88
Bra029083.1-P	Field mustard	mitochondrion	27.56	36.84
CDY70180	Canola	plastid	37.4	36.68
Os01t0143700-00	Rice	mitochondrion	37.01	36.29
Bra029051.1-P	Field mustard	plastid	36.22	35.11
CDY43065	Canola	plastid	36.22	35.11
Bra029050.1-P	Field mustard	plastid	33.86	34.96
CDY43064	Canola	plastid	33.86	34.96
CDY70179	Canola	plastid	33.86	34.96
EES00333	Sorghum	plastid	32.68	30.51
HORVU3Hr1G085260.1	Barley	cytosol	18.9	30.38
TraesCS3A01G059600.1	Wheat	plastid	32.28	30.15
EES19636	Sorghum	mitochondrion	30.32	30.08
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	32.68	29.64
TraesCS3D01G059900.1	Wheat	plastid	31.5	29.63
Os01t0143800-01	Rice	plastid	31.89	29.45
Zm00001d008610_P001	Maize	plastid	31.5	29.2
Os05t0456000-01	Rice	mitochondrion	29.53	29.07
TraesCS3D01G059600.1	Wheat	mitochondrion	33.07	28.97
TraesCS3B01G072200.1	Wheat	plastid	30.71	28.89
TraesCS3D01G059800.1	Wheat	mitochondrion	32.68	28.23
HORVU1Hr1G072660.2	Barley	mitochondrion	28.35	28.12
Bra029082.1-P	Field mustard	plastid	18.11	28.05
KRH47379	Soybean	mitochondrion	22.83	28.02
KRH44530	Soybean	mitochondrion	25.2	27.95
HORVU3Hr1G011560.1	Barley	plastid	31.5	27.78
TraesCS3B01G072000.1	Wheat	mitochondrion	29.13	27.41
TraesCS1D01G281100.1	Wheat	mitochondrion	26.77	26.98
TraesCS3D01G059700.1	Wheat	mitochondrion	29.53	26.69
KRH15786	Soybean	mitochondrion	24.41	26.16
TraesCS1B01G291000.1	Wheat	mitochondrion	26.77	26.15
KRH05267	Soybean	mitochondrion	24.02	26.07
TraesCS3B01G071900.1	Wheat	mitochondrion	31.5	25.81
TraesCS3D01G059500.1	Wheat	mitochondrion	29.92	24.52
HORVU3Hr1G011580.1	Barley	mitochondrion	12.6	19.51
HORVU3Hr1G011510.1	Barley	plastid	27.17	17.04

Protein Annotations

EntrezGene:100790011	Gene3D:3.10.280.10	MapMan:35.1	EMBL:ACUP02011366	EnsemblPlantsGene:GLYMA_18G187800	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	UniProt:I1N2M8
InterPro:IPR036561	EnsemblPlants:KRH00042	ProteinID:KRH00042	ProteinID:KRH00042.1	InterPro:MAM33	InterPro:MAM33_sf
PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	SUPFAM:SSF54529	UniParc:UPI000233F112	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:45176002..45180799

Molecular Weight (calculated)

28719.6 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.509

Length

254 amino acids

Sequence
(BLAST)

001: MAMYAMLRRA SSAALPQLAR RPAMASSSSR TFHSVLSVLR RETATTTTIA PSLRFANAFA TKSSADEHLA QVLQSEIQCA LEDDHAQHQV EVPVDFPFDI
101: EDNPGERTIQ LKGKFRDEII KVQVDIPNVA PEEEHEDDEN GNNEKNDSES SIPLVVSVFK ENGVSLEFGV TAFPDEISID SLSIKQSEES EDQLAYEGPE
201: FIDLDENLQK AFHKYLEIRG IKPSTTNFLQ EYMFAKDNKE YLMWLKNLKN FVEK

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.