Factsheet for Zm00001d039883_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G02050.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00334	Sorghum	mitochondrion, plastid	88.93	84.59
Os01t0143300-01	Rice	mitochondrion	70.75	67.8
TraesCS3A01G059200.1	Wheat	mitochondrion	68.38	66.8
TraesCS3B01G071700.1	Wheat	mitochondrion	67.98	66.41
HORVU3Hr1G011460.1	Barley	mitochondrion	64.82	64.57
HORVU0Hr1G006190.1	Barley	cytosol	44.66	63.48
GSMUA_Achr4P16890_001	Banana	mitochondrion	60.47	58.17
HORVU3Hr1G085260.1	Barley	cytosol	31.62	50.63
VIT_13s0019g02350.t01	Wine grape	mitochondrion	48.62	48.62
Solyc03g079930.2.1	Tomato	plastid	49.01	48.06
Os01t0143700-00	Rice	mitochondrion	48.22	47.1
PGSC0003DMT400055876	Potato	mitochondrion, plastid	46.25	45.88
Bra009157.1-P	Field mustard	mitochondrion	44.66	45.02
AT5G05990.1	Thale cress	mitochondrion	45.45	44.4
CDX70103	Canola	mitochondrion	44.66	44.31
Bra005873.1-P	Field mustard	mitochondrion	45.06	43.68
CDY11346	Canola	mitochondrion	45.06	43.68
KRH15056	Soybean	mitochondrion	43.48	43.48
KRH73081	Soybean	mitochondrion	43.48	43.48
CDX98894	Canola	mitochondrion	44.27	43.41
CDX80981	Canola	mitochondrion	43.48	42.47
Bra005013.1-P	Field mustard	mitochondrion	41.11	41.94
CDX74831	Canola	mitochondrion	40.71	41.37
AT2G39795.1	Thale cress	mitochondrion	40.71	41.2
CDY20481	Canola	mitochondrion	39.53	40.32
KRH00042	Soybean	nucleus	39.92	39.76
KRH49169	Soybean	endoplasmic reticulum	39.53	39.53
AT3G55605.1	Thale cress	mitochondrion	39.13	38.37
AT5G02050.1	Thale cress	mitochondrion, plastid	39.53	37.45
Bra014733.1-P	Field mustard	mitochondrion	37.94	37.07
CDY65769	Canola	mitochondrion, plastid	37.55	36.68
CDX76083	Canola	mitochondrion	37.55	36.54
CDX80800	Canola	mitochondrion	36.36	35.52
Bra005705.1-P	Field mustard	mitochondrion, plastid	35.97	35.14
CDY55117	Canola	mitochondrion, plastid	35.97	35.14
TraesCS3B01G072000.1	Wheat	mitochondrion	37.15	34.81
CDY38743	Canola	cytosol	20.55	33.99
PGSC0003DMT400022948	Potato	mitochondrion	33.2	33.47
AT2G39790.1	Thale cress	mitochondrion, plastid	31.62	33.33
Solyc09g011250.2.1	Tomato	mitochondrion	32.81	33.07
TraesCS3D01G059700.1	Wheat	mitochondrion	36.36	32.74
HORVU3Hr1G011490.1	Barley	cytosol	17.0	32.33
CDY47064	Canola	plastid	31.23	32.11
CDY38740	Canola	plastid	29.64	30.99
Bra029081.1-P	Field mustard	plastid	27.67	30.57
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	33.6	30.36
TraesCS3B01G071900.1	Wheat	mitochondrion	36.36	29.68
TraesCS3D01G059500.1	Wheat	mitochondrion	36.36	29.68
TraesCS3D01G059800.1	Wheat	mitochondrion	34.39	29.59
Zm00001d008610_P001	Maize	plastid	32.02	29.56
Bra029083.1-P	Field mustard	mitochondrion	22.13	29.47
CDY43064	Canola	plastid	27.67	28.46
Bra029050.1-P	Field mustard	plastid	27.67	28.46
CDY70180	Canola	plastid	28.46	27.8
CDY70179	Canola	plastid	26.88	27.64
TraesCS3D01G059600.1	Wheat	mitochondrion	31.62	27.59
HORVU3Hr1G011580.1	Barley	mitochondrion	17.79	27.44
Zm00001d045926_P002	Maize	mitochondrion	28.46	27.38
CDY43065	Canola	plastid	27.67	26.72
Bra029051.1-P	Field mustard	plastid	27.67	26.72
CDY47065	Canola	plastid	14.23	25.53
Bra029082.1-P	Field mustard	plastid	15.41	23.78
Zm00001d032163_P001	Maize	mitochondrion	19.76	21.74
HORVU3Hr1G011510.1	Barley	plastid	30.43	19.01

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	UniProt:A0A1D6MLK3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036561
InterPro:MAM33	InterPro:MAM33_sf	ProteinID:ONM30091.1	PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12
SUPFAM:SSF54529	UniParc:UPI0008423880	EnsemblPlantsGene:Zm00001d039883	EnsemblPlants:Zm00001d039883_P001	EnsemblPlants:Zm00001d039883_T001	SEG:seg

Description

Mitochondrial glycoprotein family protein

Coordinates

chr3:+:17590735..17593442

Molecular Weight (calculated)

27857.2 Da

IEP (calculated)

4.156

GRAVY (calculated)

-0.515

Length

253 amino acids

Sequence
(BLAST)

001: MALFAAARRA AASSVPVLLR ASASSGSHRS AVLLRPLAAA VAPPKPRAMP FSSAPATRPS SDAELLSVID SEIKYAEDCD DHDRVEEIPE NFPFKISDEK
101: GTNAVTLKRT YQGEQIEVVV HMPSLVTGDE PDHDRDGEDE DTAGDDNDED EGQKPEQSSI PLTVTISKGD GPVLEFTCTA YPDEVIIDSM SVTQQSGDDE
201: RDMIAYEGPD FNDLDENLQR EFHRYLDLRG ISPRTTNFLH LYMINKDSLL NFI

Best Arabidopsis Sequence Match ( AT5G05990.1 )
(BLAST)

001: MATLVRRAAS RFVGSYWKNR SFVYSLLDQS ASGRRRHLTP SVDRNVPFTT STKKRASPTD PLLRIIEEEI GYAEKADDYH RVEETPSGFP FEMEDKPGGK
101: IVTLTREYEG ETVKVEVHMT NLVTGDKEDD EDDEEEAENE EDEDEDKPLK PKQSNVPLLV TLSKKTGPSL EFRCTAFPDR IAIKDMWVTF PDDPSKDELA
201: YEGPSFRVLD EKLRKAFHRY IEIRGIKPSM INFLHEYMIN KDSREHLLWL KSLKNFVKY

Arabidopsis Description

AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.