Factsheet for Zm00001d032163_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15053	Sorghum	mitochondrion	90.43	90.04
Os08t0439900-01	Rice	mitochondrion	68.7	67.81
TraesCS2B01G542100.1	Wheat	mitochondrion	64.78	67.12
TraesCS2A01G514500.1	Wheat	mitochondrion	65.22	66.67
TraesCS2D01G516100.1	Wheat	mitochondrion	64.78	63.68
GSMUA_Achr5P22820_001	Banana	mitochondrion	48.7	49.34
HORVU2Hr1G113990.2	Barley	plastid	34.78	43.01
CDX68804	Canola	cytosol	17.83	34.45
VIT_04s0008g05940.t01	Wine grape	mitochondrion	36.96	34.0
KRH05267	Soybean	mitochondrion	32.17	31.62
PGSC0003DMT400067216	Potato	mitochondrion	32.17	31.36
Solyc06g065800.2.1	Tomato	mitochondrion	31.74	30.93
KRH15786	Soybean	mitochondrion	31.3	30.38
AT4G31930.1	Thale cress	mitochondrion	30.0	29.49
CDY13466	Canola	mitochondrion	31.3	29.39
Bra023971.1-P	Field mustard	plastid	31.3	28.69
CDX72338	Canola	plastid	30.0	27.6
Zm00001d045926_P002	Maize	mitochondrion	23.91	20.91
Zm00001d039883_P001	Maize	mitochondrion	21.74	19.76
Zm00001d008610_P001	Maize	plastid	21.74	18.25

Protein Annotations

EntrezGene:100283687	Gene3D:3.10.280.10	MapMan:35.2	UniProt:B6TKL5	EMBL:BT068768	EMBL:EU965530
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	ProteinID:ONM04484.1	PFAM:PF02330	PANTHER:PTHR10826
PANTHER:PTHR10826:SF16	SUPFAM:SSF54529	UniParc:UPI000182DC98	EnsemblPlantsGene:Zm00001d032163	EnsemblPlants:Zm00001d032163_P001	EnsemblPlants:Zm00001d032163_T001
SEG:seg	:	:	:	:	:

Description

Mitochondrial glycoprotein family protein

Coordinates

chr1:-:215117483..215125708

Molecular Weight (calculated)

25988.1 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.502

Length

230 amino acids

Sequence
(BLAST)

001: MALARRLLRL TPYLGTLSLP PPNSHLLRNR TYISDMRRSA FVDRLLRSVR SEISFLDNSA PPPPPPPPKP FTIEDRPGEQ WARLRRVFPA AEGEEEEVRV
101: DATLVDGALP PSRSGADTGG PPRMHISVKV EVSKAARPGV ALTFECSAWP DEMEVRRVFP VRRGGPAPVQ QYVGRQFSEL DEEMQSAVQD YLEKIGVNDD
201: LAAFLHAYME NKEHTELIRW LKNVECHIKK

Best Arabidopsis Sequence Match ( AT1G15870.1 )
(BLAST)

001: MARLLRCLRR SFIFSSSTSI AYRNPRICVQ SNQSYIFLSS RKFLSSGSYV SEMRRTAFEG NILRLIRLEI QSELDHSPIL QPEESFGPFT VDERPGEQWI
101: SLRRKFGEKE DIKIEATMFD GSVPSSKSTT SDPEDVQLHI TFIVNISKGD GETLEIMCSA WPDTIQITKF FVRKSSQNSP NAYIGPEFQE MEDELQDSVY
201: RFLEERGISD DLAEFLHQYM KNKDKAEYIR WMETVKSYVE QK

Arabidopsis Description

At1g15870/F7H2_19 [Source:UniProtKB/TrEMBL;Acc:Q9LMP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.