Factsheet for Zm00001d008610_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT5G02050.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00333	Sorghum	plastid	85.4	86.03
Os01t0143800-01	Rice	plastid	70.07	69.82
TraesCS3A01G059600.1	Wheat	plastid	62.41	62.87
TraesCS3D01G059900.1	Wheat	plastid	61.31	62.22
TraesCS3B01G072200.1	Wheat	plastid	60.95	61.85
HORVU3Hr1G011560.1	Barley	plastid	62.41	59.38
VIT_13s0019g02350.t01	Wine grape	mitochondrion	32.85	35.57
GSMUA_Achr4P16890_001	Banana	mitochondrion	33.58	34.98
KRH15056	Soybean	mitochondrion	32.12	34.78
Solyc03g079930.2.1	Tomato	plastid	32.48	34.5
KRH73081	Soybean	mitochondrion	31.39	33.99
PGSC0003DMT400055876	Potato	mitochondrion, plastid	31.39	33.73
CDX70103	Canola	mitochondrion	31.39	33.73
CDX98894	Canola	mitochondrion	31.39	33.33
Bra009157.1-P	Field mustard	mitochondrion	30.29	33.07
Bra005013.1-P	Field mustard	mitochondrion	29.93	33.06
CDY20481	Canola	mitochondrion	29.93	33.06
AT2G39795.1	Thale cress	mitochondrion	29.93	32.8
AT3G55605.1	Thale cress	mitochondrion	30.66	32.56
CDX74831	Canola	mitochondrion	29.56	32.53
AT5G05990.1	Thale cress	mitochondrion	30.29	32.05
Zm00001d039883_P001	Maize	mitochondrion	29.56	32.02
KRH49169	Soybean	endoplasmic reticulum	29.2	31.62
KRH00042	Soybean	nucleus	29.2	31.5
PGSC0003DMT400022948	Potato	mitochondrion	28.83	31.47
CDY11346	Canola	mitochondrion	29.56	31.03
Bra005873.1-P	Field mustard	mitochondrion	29.56	31.03
CDY38743	Canola	cytosol	17.15	30.72
Bra014733.1-P	Field mustard	mitochondrion	28.47	30.12
CDX76083	Canola	mitochondrion	28.47	30.0
CDX80981	Canola	mitochondrion	28.1	29.73
Solyc09g011250.2.1	Tomato	mitochondrion	27.01	29.48
CDY65769	Canola	mitochondrion, plastid	27.74	29.34
CDY55117	Canola	mitochondrion, plastid	27.74	29.34
Bra005705.1-P	Field mustard	mitochondrion, plastid	27.74	29.34
CDX80800	Canola	mitochondrion	27.37	28.96
AT5G02050.1	Thale cress	mitochondrion, plastid	27.37	28.09
Bra029083.1-P	Field mustard	mitochondrion	19.34	27.89
CDY70179	Canola	plastid	24.09	26.83
Bra029081.1-P	Field mustard	plastid	22.26	26.64
CDY38740	Canola	plastid	23.36	26.45
Bra029050.1-P	Field mustard	plastid	23.36	26.02
CDY43064	Canola	plastid	23.36	26.02
CDY70180	Canola	plastid	24.45	25.87
CDY47064	Canola	plastid	22.99	25.61
CDY43065	Canola	plastid	24.09	25.19
Bra029051.1-P	Field mustard	plastid	24.09	25.19
AT2G39790.1	Thale cress	mitochondrion, plastid	21.9	25.0
Zm00001d045926_P002	Maize	mitochondrion	22.26	23.19
CDY47065	Canola	plastid	11.31	21.99
Zm00001d032163_P001	Maize	mitochondrion	18.25	21.74
Bra029082.1-P	Field mustard	plastid	9.85	16.46

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	ProteinID:AQK90261.1	UniProt:B4FJ38	EMBL:BT037126	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561
InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF15	SUPFAM:SSF54529
SignalP:SignalP-noTM	UniParc:UPI00017B72B1	EnsemblPlantsGene:Zm00001d008610	EnsemblPlants:Zm00001d008610_P001	EnsemblPlants:Zm00001d008610_T001	SEG:seg

Description

Mitochondrial glycoprotein family protein

Coordinates

chr8:-:14450353..14453064

Molecular Weight (calculated)

30030.1 Da

IEP (calculated)

4.250

GRAVY (calculated)

-0.560

Length

274 amino acids

Sequence
(BLAST)

001: MAMAMALASA TAAALFRSAL SAPHGAGARV RPQRRQPFLA PLHAAKGPGS APVVLEGKAK GKKKKGPSSG NLPAALDVEI REAQEYLDSD QQEPVPDNFP
101: FELIDEEGMS VVILRRDYKD EKVEVTVSMP NLEGGPEFGD EDGEGDGESA VKDDGEAEED DESAGDSSIS LKVVVSKDSG PKLEFTCTAF REEITIDDML
201: IVEKTDDDDG EEKFPYEGPE FTELPVNVQK GLFKYLEQRG VTLSATNYMH DYMVTKQAQE YIRWMTKLKD FVTQ

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.