CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77719
CDX77721
CDX77779
CDX77781
CDX77784
CDX80270
CDX84467
CDX87694
CDY17722
CDY17724
CDY33037
CDY33502
CDY37163
CDY37164
CDY37166
CDY41336
CDY43629
CDY43630
CDY53682
CDY56707
CDY67243

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55605.1	CDX77719	AT5G47590.1	21798944
AT3G55605.1	CDX77721	AT5G47590.1	21798944
AT3G55605.1	CDX77779	AT5G47590.1	21798944
AT3G55605.1	CDX77781	AT5G47590.1	21798944
AT3G55605.1	CDX77784	AT5G47590.1	21798944
AT3G55605.1	CDX80270	AT5G47590.1	21798944
AT3G55605.1	CDX84467	AT5G47590.1	21798944
AT3G55605.1	CDX87694	AT5G47590.1	21798944
AT3G55605.1	CDY17722	AT5G47590.1	21798944
AT3G55605.1	CDY17724	AT5G47590.1	21798944
AT3G55605.1	CDY33037	AT5G47590.1	21798944
AT3G55605.1	CDY33502	AT5G47590.1	21798944
AT3G55605.1	CDY37163	AT5G47590.1	21798944
AT3G55605.1	CDY37164	AT5G47590.1	21798944
AT3G55605.1	CDY37166	AT5G47590.1	21798944
AT3G55605.1	CDY41336	AT5G47590.1	21798944
AT3G55605.1	CDY43629	AT5G47590.1	21798944
AT3G55605.1	CDY43630	AT5G47590.1	21798944
AT3G55605.1	CDY53682	AT5G47590.1	21798944
AT3G55605.1	CDY56707	AT5G47590.1	21798944
AT3G55605.1	CDY67243	AT5G47590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014733.1-P	Field mustard	mitochondrion	94.59	94.59
CDX76083	Canola	mitochondrion	94.59	94.23
AT3G55605.1	Thale cress	mitochondrion	80.31	80.62
CDX74831	Canola	mitochondrion	56.37	58.63
CDY20481	Canola	mitochondrion	55.98	58.47
HORVU0Hr1G006190.1	Barley	cytosol	33.98	49.44
CDX70103	Canola	mitochondrion	41.7	42.35
CDX98894	Canola	mitochondrion	40.93	41.09
HORVU3Hr1G011460.1	Barley	mitochondrion	40.15	40.94
GSMUA_Achr4P16890_001	Banana	mitochondrion	40.93	40.3
TraesCS3A01G059200.1	Wheat	mitochondrion	40.15	40.15
CDY38743	Canola	cytosol	23.55	39.87
Os01t0143300-01	Rice	mitochondrion	40.54	39.77
CDX80981	Canola	mitochondrion	39.77	39.77
TraesCS3B01G071700.1	Wheat	mitochondrion	39.38	39.38
CDY11346	Canola	mitochondrion	39.38	39.08
EES00334	Sorghum	mitochondrion, plastid	39.77	38.72
HORVU3Hr1G011490.1	Barley	cytosol	19.3	37.59
Zm00001d039883_P001	Maize	mitochondrion	36.68	37.55
CDY55117	Canola	mitochondrion, plastid	37.45	37.45
CDX80800	Canola	mitochondrion	36.29	36.29
HORVU3Hr1G085260.1	Barley	cytosol	21.62	35.44
Os01t0143700-00	Rice	mitochondrion	32.05	32.05
CDY43064	Canola	plastid	30.12	31.71
CDY38740	Canola	plastid	29.34	31.41
CDY47064	Canola	plastid	29.73	31.3
CDY70180	Canola	plastid	30.89	30.89
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	33.2	30.71
TraesCS3A01G059600.1	Wheat	plastid	32.05	30.51
CDY70179	Canola	plastid	28.96	30.49
TraesCS3D01G059900.1	Wheat	plastid	31.66	30.37
CDY47065	Canola	plastid	16.22	29.79
CDY43065	Canola	plastid	30.12	29.77
TraesCS3B01G072200.1	Wheat	plastid	30.89	29.63
TraesCS3B01G072000.1	Wheat	mitochondrion	30.89	29.63
TraesCS3D01G059700.1	Wheat	mitochondrion	32.05	29.54
EES00333	Sorghum	plastid	29.34	27.94
Zm00001d008610_P001	Maize	plastid	29.34	27.74
CDX68804	Canola	cytosol	12.74	27.73
HORVU3Hr1G011560.1	Barley	plastid	30.5	27.43
TraesCS1D01G281100.1	Wheat	mitochondrion	26.64	27.38
Os01t0143800-01	Rice	plastid	28.96	27.27
EES19636	Sorghum	mitochondrion	26.64	26.95
TraesCS3D01G059800.1	Wheat	mitochondrion	30.5	26.87
CDY33373	Canola	mitochondrion	24.32	25.93
CDY39948	Canola	mitochondrion	23.94	25.62
Os05t0456000-01	Rice	mitochondrion	25.48	25.58
CDY35045	Canola	mitochondrion	23.55	25.21
HORVU1Hr1G072660.2	Barley	mitochondrion	24.71	25.0
CDX87337	Canola	mitochondrion	23.17	24.79
TraesCS1B01G291000.1	Wheat	mitochondrion	24.71	24.62
TraesCS3B01G071900.1	Wheat	mitochondrion	28.19	23.55
TraesCS3D01G059500.1	Wheat	mitochondrion	27.8	23.23
TraesCS3D01G059600.1	Wheat	mitochondrion	24.71	22.07
CDY13466	Canola	mitochondrion	20.46	21.63
HORVU3Hr1G011580.1	Barley	mitochondrion	13.51	21.34
CDX72338	Canola	plastid	19.69	20.4
HORVU3Hr1G011510.1	Barley	plastid	26.64	17.04

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	GO:A0A078JGH4	UniProt:A0A078JGH4	EnsemblPlants:CDY65769	ProteinID:CDY65769
ProteinID:CDY65769.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	EnsemblPlantsGene:GSBRNA2T00048189001	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330
PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	SUPFAM:SSF54529	UniParc:UPI0004EEFC83	SEG:seg	:

Description

BnaC04g55580DBnaC04g55580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGH4]

Coordinates

chrLK034939:-:10567..12391

Molecular Weight (calculated)

29114.1 Da

IEP (calculated)

4.425

GRAVY (calculated)

-0.536

Length

259 amino acids

Sequence
(BLAST)

001: MVFPLCIGRS ASRLASVCGR VARPQAISAV VVNRSSLVSK PSSLLRPFVS RGFLYSTDTN DRLKSDQTLI QVIDSEIKDA FDADVVQGED ETPGSGDFPF
101: KIEDNPGHRT VTLTREYNGE QIRVEVSMPG SMDEHEDGMD DNEDGDEKAN ETNIPLVVTV TKKSGLSLEF SCTAFPDAIV IDGLSVNHSD KSSEEEEQLT
201: YDGPDFQELD ENMRRSFHKF LEARGIKPSV TDFMHEYMMK KDSREYLLWL KNLKNFIQE

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.