CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035158.1-P	Field mustard	mitochondrion	97.11	97.11
CDX87337	Canola	mitochondrion	97.11	97.11
AT1G80720.2	Thale cress	mitochondrion	83.47	83.47
CDY33373	Canola	mitochondrion	69.01	68.72
CDY35045	Canola	mitochondrion	66.12	66.12
VIT_09s0002g09050.t01	Wine grape	cytosol	42.56	53.37
KRH44530	Soybean	mitochondrion	50.0	52.84
KRH47379	Soybean	mitochondrion	42.56	49.76
Solyc03g117080.2.1	Tomato	mitochondrion	45.87	48.26
PGSC0003DMT400036809	Potato	mitochondrion	45.87	48.26
CDX68804	Canola	cytosol	18.59	37.82
CDY13466	Canola	mitochondrion	35.54	35.1
CDX72338	Canola	plastid	35.54	34.4
CDY38743	Canola	cytosol	20.66	32.68
CDY20481	Canola	mitochondrion	28.1	27.42
CDY55117	Canola	mitochondrion, plastid	29.34	27.41
CDX80800	Canola	mitochondrion	29.34	27.41
CDX74831	Canola	mitochondrion	28.1	27.31
CDY47064	Canola	plastid	27.27	26.83
CDY38740	Canola	plastid	26.45	26.45
CDY47065	Canola	plastid	15.29	26.24
CDX76083	Canola	mitochondrion	26.45	24.62
CDY65769	Canola	mitochondrion, plastid	25.62	23.94
CDY11346	Canola	mitochondrion	25.62	23.75
CDX70103	Canola	mitochondrion	24.79	23.53
CDY43065	Canola	plastid	25.21	23.28
CDX80981	Canola	mitochondrion	24.79	23.17
CDX98894	Canola	mitochondrion	24.38	22.87
CDY70180	Canola	plastid	24.38	22.78
CDY43064	Canola	plastid	22.31	21.95
CDY70179	Canola	plastid	21.9	21.54

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	GO:A0A078HT61	UniProt:A0A078HT61	EnsemblPlants:CDY39948	ProteinID:CDY39948
ProteinID:CDY39948.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	EnsemblPlantsGene:GSBRNA2T00068827001	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330
PANTHER:PTHR10826	PANTHER:PTHR10826:SF16	SUPFAM:SSF54529	UniParc:UPI0004EEDEA7	:	:

Description

BnaC06g40260DBnaC06g40260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT61]

Coordinates

chrLK032461:-:46237..47352

Molecular Weight (calculated)

27786.0 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.536

Length

242 amino acids

Sequence
(BLAST)

001: MARFLRCLRR TVFSDSSPSI AYRNPKIGLP TIQNRNFLIG GRCLSSGSYV SEMQKSAFQG NICRLIRNEI DYELNHSPPL QSPSSYGPFT VEERPGEQWI
101: SLKRKYGDKE DIKVEATMFD RSVPTSKSTR TEPEFILHIT FVVNISKGIS GESLEIMCSA WPDNIEISKL CIRKGTNSSP SSYGGPEFEE LDDELQDALY
201: QFLEERGISD ELAVFLHRYM KNKSKFEYVR WMESVKSYVE KN

Best Arabidopsis Sequence Match ( AT1G80720.2 )
(BLAST)

001: MARFVRCLRR TLFSNSSPSI AHRSPRIGLP TNLNPKILIS RRCLSSGSYV SEMQKSAFQG NILRLIRNEI EYELDHSPPL QPPNSFGPFT VDERPGEQWI
101: SLKRNFGDKE DIKIEATMFD RSVPTSKSTK TEPEYILHIT FIVNISKAGA TEALEIMCSA WPDTIEISKL CIRRGINTSP SSYGGPEFEE LDDQLQDALY
201: QFLEERGISD ELAVFLHRYM KNKGKAEYVR WMESVKSYVE QK

Arabidopsis Description

Mitochondrial glycoprotein family protein [Source:TAIR;Acc:AT1G80720]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.