CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	EER89430	AT4G25200.1	21798944
AT5G02050.1	EER89431	AT4G25200.1	21798944
AT5G02050.1	KXG19616	AT4G25200.1	21798944
AT5G02050.1	OQU75612	AT4G25200.1	21798944
AT5G02050.1	OQU75930	AT4G25200.1	21798944
AT5G02050.1	OQU76071	AT4G25200.1	21798944
AT5G02050.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039883_P001	Maize	mitochondrion	84.59	88.93
Os01t0143300-01	Rice	mitochondrion	73.68	74.24
TraesCS3A01G059200.1	Wheat	mitochondrion	72.18	74.13
TraesCS3B01G071700.1	Wheat	mitochondrion	71.8	73.75
HORVU0Hr1G006190.1	Barley	cytosol	48.87	73.03
HORVU3Hr1G011460.1	Barley	mitochondrion	68.42	71.65
GSMUA_Achr4P16890_001	Banana	mitochondrion	59.77	60.46
HORVU3Hr1G085260.1	Barley	cytosol	31.2	52.53
VIT_13s0019g02350.t01	Wine grape	mitochondrion	49.62	52.17
Os01t0143700-00	Rice	mitochondrion	50.38	51.74
Solyc03g079930.2.1	Tomato	plastid	48.87	50.39
PGSC0003DMT400055876	Potato	mitochondrion, plastid	46.24	48.24
CDX70103	Canola	mitochondrion	45.11	47.06
Bra009157.1-P	Field mustard	mitochondrion	44.36	47.01
KRH15056	Soybean	mitochondrion	44.36	46.64
AT5G05990.1	Thale cress	mitochondrion	44.74	45.95
KRH73081	Soybean	mitochondrion	43.61	45.85
CDX98894	Canola	mitochondrion	43.98	45.35
Bra005873.1-P	Field mustard	mitochondrion	43.98	44.83
CDY11346	Canola	mitochondrion	43.98	44.83
AT2G39795.1	Thale cress	mitochondrion	42.11	44.8
Bra005013.1-P	Field mustard	mitochondrion	41.73	44.76
CDX80981	Canola	mitochondrion	43.23	44.4
CDX74831	Canola	mitochondrion	41.35	44.18
CDY20481	Canola	mitochondrion	40.6	43.55
AT3G55605.1	Thale cress	mitochondrion	40.98	42.25
KRH00042	Soybean	nucleus	39.47	41.34
KRH49169	Soybean	endoplasmic reticulum	39.1	41.11
Bra014733.1-P	Field mustard	mitochondrion	39.1	40.15
CDY65769	Canola	mitochondrion, plastid	38.72	39.77
CDX76083	Canola	mitochondrion	38.72	39.62
AT5G02050.1	Thale cress	mitochondrion, plastid	39.47	39.33
HORVU3Hr1G011490.1	Barley	cytosol	19.17	38.35
CDY38743	Canola	cytosol	21.8	37.91
CDX80800	Canola	mitochondrion	36.47	37.45
TraesCS3B01G072000.1	Wheat	mitochondrion	37.97	37.41
Bra005705.1-P	Field mustard	mitochondrion, plastid	36.09	37.07
CDY55117	Canola	mitochondrion, plastid	36.09	37.07
EES19636	Sorghum	mitochondrion	34.96	36.33
EES00333	Sorghum	plastid	36.47	35.66
PGSC0003DMT400022948	Potato	mitochondrion	33.46	35.46
AT2G39790.1	Thale cress	mitochondrion, plastid	31.95	35.42
TraesCS3D01G059700.1	Wheat	mitochondrion	37.22	35.23
Solyc09g011250.2.1	Tomato	mitochondrion	33.08	35.06
CDY47064	Canola	plastid	31.2	33.74
Bra029081.1-P	Field mustard	plastid	28.57	33.19
CDY38740	Canola	plastid	30.08	33.06
Bra029083.1-P	Field mustard	mitochondrion	23.31	32.63
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	33.83	32.14
TraesCS3D01G059800.1	Wheat	mitochondrion	35.34	31.97
CDY47065	Canola	plastid	16.54	31.21
CDY43064	Canola	plastid	28.57	30.89
Bra029050.1-P	Field mustard	plastid	28.57	30.89
CDY70179	Canola	plastid	27.82	30.08
TraesCS3B01G071900.1	Wheat	mitochondrion	34.96	30.0
TraesCS3D01G059500.1	Wheat	mitochondrion	34.59	29.68
TraesCS3D01G059600.1	Wheat	mitochondrion	31.95	29.31
EER88336	Sorghum	mitochondrion	28.95	29.06
CDY70180	Canola	plastid	28.2	28.96
Bra029051.1-P	Field mustard	plastid	27.44	27.86
CDY43065	Canola	plastid	27.44	27.86
HORVU3Hr1G011580.1	Barley	mitochondrion	16.92	27.44
KXG36169	Sorghum	mitochondrion	24.06	27.12
EES15053	Sorghum	mitochondrion	20.3	23.38
Bra029082.1-P	Field mustard	plastid	13.53	21.95
HORVU3Hr1G011510.1	Barley	plastid	30.45	20.0

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	EntrezGene:8073318	UniProt:C5XQ32	EnsemblPlants:EES00334	ProteinID:EES00334
ProteinID:EES00334.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826
PANTHER:PTHR10826:SF12	EnsemblPlantsGene:SORBI_3003G075200	SUPFAM:SSF54529	unigene:Sbi.18362	UniParc:UPI0001A84775	RefSeq:XP_002455214.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:6379303..6381984

Molecular Weight (calculated)

29530.2 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.578

Length

266 amino acids

Sequence
(BLAST)

001: MALFAAARRA AASSVPILLR ASASSGSHRS AALLRPLAAA VARPKPRAMP FSSAPATRPS SDAELLSVID SEIKYAEDCD DHDRVEEIPD NFPFKISDEK
101: GTNVVTLKRT YQGEQIEVVA HMPSLVTGDE PDHDRDGEDE GEDKEGDDDA EDEGQKPEQS SVPLTVTITK GDGPVLEFAC TAYPDEVLID ALSVTQPSGD
201: DEHDMIVYEG PDFNDLDENL QRAFHKYLEL RGISPMTTNF LHEYMINKDS REYLLWLRKL KDYFKQ

Best Arabidopsis Sequence Match ( AT5G05990.1 )
(BLAST)

001: MATLVRRAAS RFVGSYWKNR SFVYSLLDQS ASGRRRHLTP SVDRNVPFTT STKKRASPTD PLLRIIEEEI GYAEKADDYH RVEETPSGFP FEMEDKPGGK
101: IVTLTREYEG ETVKVEVHMT NLVTGDKEDD EDDEEEAENE EDEDEDKPLK PKQSNVPLLV TLSKKTGPSL EFRCTAFPDR IAIKDMWVTF PDDPSKDELA
201: YEGPSFRVLD EKLRKAFHRY IEIRGIKPSM INFLHEYMIN KDSREHLLWL KSLKNFVKY

Arabidopsis Description

AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.