Factsheet for Solyc03g079930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055876	Potato	mitochondrion, plastid	91.09	92.16
VIT_13s0019g02350.t01	Wine grape	mitochondrion	68.6	69.96
HORVU0Hr1G006190.1	Barley	cytosol	41.09	59.55
KRH15056	Soybean	mitochondrion	53.1	54.15
KRH73081	Soybean	mitochondrion	53.1	54.15
HORVU3Hr1G011460.1	Barley	mitochondrion	50.78	51.57
TraesCS3B01G071700.1	Wheat	mitochondrion	50.78	50.58
TraesCS3A01G059200.1	Wheat	mitochondrion	50.78	50.58
GSMUA_Achr4P16890_001	Banana	mitochondrion	51.55	50.57
Os01t0143300-01	Rice	mitochondrion	50.78	49.62
Zm00001d039883_P001	Maize	mitochondrion	48.06	49.01
EES00334	Sorghum	mitochondrion, plastid	50.39	48.87
CDX70103	Canola	mitochondrion	44.57	45.1
Bra009157.1-P	Field mustard	mitochondrion	43.8	45.02
CDX80981	Canola	mitochondrion	44.96	44.79
AT5G05990.1	Thale cress	mitochondrion	44.96	44.79
Bra005873.1-P	Field mustard	mitochondrion	44.96	44.44
CDX98894	Canola	mitochondrion	44.19	44.19
CDY11346	Canola	mitochondrion	44.57	44.06
HORVU3Hr1G085260.1	Barley	cytosol	25.97	42.41
Os01t0143700-00	Rice	mitochondrion	40.31	40.15
Solyc09g011250.2.1	Tomato	mitochondrion	37.21	38.25
HORVU3Hr1G011490.1	Barley	cytosol	18.22	35.34
EES00333	Sorghum	plastid	37.21	35.29
Os01t0143800-01	Rice	plastid	36.82	34.55
TraesCS3B01G072200.1	Wheat	plastid	34.11	32.59
Zm00001d008610_P001	Maize	plastid	34.5	32.48
TraesCS3A01G059600.1	Wheat	plastid	34.11	32.35
TraesCS3D01G059900.1	Wheat	plastid	33.72	32.22
EES19636	Sorghum	mitochondrion	31.78	32.03
Os05t0456000-01	Rice	mitochondrion	31.4	31.4
HORVU3Hr1G011560.1	Barley	plastid	34.5	30.9
HORVU1Hr1G072660.2	Barley	mitochondrion	30.62	30.86
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	32.95	30.36
TraesCS3B01G072000.1	Wheat	mitochondrion	31.4	30.0
TraesCS1D01G281100.1	Wheat	mitochondrion	29.07	29.76
TraesCS3D01G059800.1	Wheat	mitochondrion	33.72	29.59
TraesCS1B01G291000.1	Wheat	mitochondrion	29.07	28.85
TraesCS3D01G059700.1	Wheat	mitochondrion	31.4	28.83
Solyc03g117080.2.1	Tomato	mitochondrion	24.42	27.39
TraesCS3D01G059500.1	Wheat	mitochondrion	29.46	24.52
TraesCS3D01G059600.1	Wheat	mitochondrion	27.13	24.14
TraesCS3B01G071900.1	Wheat	mitochondrion	28.68	23.87
HORVU3Hr1G011580.1	Barley	mitochondrion	14.73	23.17
Solyc06g065800.2.1	Tomato	mitochondrion	20.54	22.46
HORVU3Hr1G011510.1	Barley	plastid	27.91	17.78

Protein Annotations

EnsemblPlants:Solyc03g079930.2.1	EnsemblPlantsGene:Solyc03g079930.2	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf
PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	SEG:seg	SUPFAM:SSF54529	UniParc:UPI0002768199
UniProt:K4BHX0	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:51851779..51853287

Molecular Weight (calculated)

29144.8 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.616

Length

258 amino acids

Sequence
(BLAST)

001: MAVTNIIRRT ASQVVPLAAR VIFRTQSYHH RSSALLSTIV NRSAASRNFF RSSAPSTLHF YSTKRPSSDE SLLKVIQSEI QCAEESDEQD EVEEAPEGFP
101: FKIEDHPGQQ TITLTREYQG ESINVEVHMP DLVTGDEDEN DNGGEDDDEG SNQSNIPLVV RVSKRNGPAL EFGITAFADE IAIDTLSIKD PNVAEDQIAY
201: EGPDFTDLDE NLQKAFHKYL EIRGIKPSTT NFLHEYMVNK DSREYKMWLK NLKKFIEA

Best Arabidopsis Sequence Match ( AT2G39795.1 )
(BLAST)

001: MALAWCVVRR SASKFASVYG GRVRSISAVA NRASLARNPS SIRPFVSRAL NYSTAIDRIS SEQTLIRVID SEINSALQSD NIDSDEEMTP GSFPFRIEDK
101: PGNQNVTLTR DYNGEHIKVV VSMPSLVSDE NDDDDDDDEG PSNESSIPLV VTVTKKSGLT LEFSCMAFPD EIAIDALSVK HPGDSLEDQL ANEGPDFEDL
201: DENLKKTFYK FLEIRGVKAS TTNFLHEYMT RKVNREYFLW LKNVKEFMEQ

Arabidopsis Description

Uncharacterized protein At2g39795, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W487]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.