CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15056	Soybean	mitochondrion	91.3	91.3
VIT_13s0019g02350.t01	Wine grape	mitochondrion	60.08	60.08
HORVU0Hr1G006190.1	Barley	cytosol	39.92	56.74
Solyc03g079930.2.1	Tomato	plastid	54.15	53.1
PGSC0003DMT400055876	Potato	mitochondrion, plastid	52.96	52.55
GSMUA_Achr4P16890_001	Banana	mitochondrion	49.8	47.91
TraesCS3B01G071700.1	Wheat	mitochondrion	48.62	47.49
HORVU3Hr1G011460.1	Barley	mitochondrion	47.43	47.24
TraesCS3A01G059200.1	Wheat	mitochondrion	48.22	47.1
Os01t0143300-01	Rice	mitochondrion	47.04	45.08
KRH00042	Soybean	nucleus	44.27	44.09
KRH49169	Soybean	endoplasmic reticulum	43.87	43.87
Bra009157.1-P	Field mustard	mitochondrion	43.48	43.82
EES00334	Sorghum	mitochondrion, plastid	45.85	43.61
Zm00001d039883_P001	Maize	mitochondrion	43.48	43.48
CDX70103	Canola	mitochondrion	43.48	43.14
CDX98894	Canola	mitochondrion	43.48	42.64
Bra005873.1-P	Field mustard	mitochondrion	42.29	41.0
CDY11346	Canola	mitochondrion	41.9	40.61
AT5G05990.1	Thale cress	mitochondrion	41.5	40.54
CDX80981	Canola	mitochondrion	40.71	39.77
HORVU3Hr1G085260.1	Barley	cytosol	24.51	39.24
Os01t0143700-00	Rice	mitochondrion	39.13	38.22
HORVU3Hr1G011490.1	Barley	cytosol	18.58	35.34
TraesCS1D01G281100.1	Wheat	mitochondrion	32.81	32.94
HORVU1Hr1G072660.2	Barley	mitochondrion	33.2	32.81
Os01t0143800-01	Rice	plastid	35.57	32.73
EES19636	Sorghum	mitochondrion	32.41	32.03
EES00333	Sorghum	plastid	34.39	31.99
Os05t0456000-01	Rice	mitochondrion	32.41	31.78
KRH44530	Soybean	mitochondrion	28.46	31.44
Zm00001d008610_P001	Maize	plastid	33.99	31.39
TraesCS1B01G291000.1	Wheat	mitochondrion	32.02	31.15
KRH47379	Soybean	mitochondrion	25.3	30.92
TraesCS3B01G072200.1	Wheat	plastid	32.02	30.0
TraesCS3D01G059900.1	Wheat	plastid	32.02	30.0
TraesCS3A01G059600.1	Wheat	plastid	31.62	29.41
TraesCS3B01G072000.1	Wheat	mitochondrion	30.04	28.15
HORVU3Hr1G011560.1	Barley	plastid	31.62	27.78
TraesCS3D01G059700.1	Wheat	mitochondrion	30.04	27.05
TraesCS3D01G059800.1	Wheat	mitochondrion	30.43	26.19
KRH05267	Soybean	mitochondrion	24.11	26.07
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	28.06	25.36
KRH15786	Soybean	mitochondrion	23.72	25.32
TraesCS3D01G059600.1	Wheat	mitochondrion	28.85	25.17
TraesCS3B01G071900.1	Wheat	mitochondrion	29.64	24.19
TraesCS3D01G059500.1	Wheat	mitochondrion	28.85	23.55
HORVU3Hr1G011510.1	Barley	plastid	27.27	17.04
HORVU3Hr1G011580.1	Barley	mitochondrion	10.67	16.46

Protein Annotations

EMBL:ACUP02001264	EnsemblPlants:KRH73081	EnsemblPlantsGene:GLYMA_02G251000	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:KRH73081	ProteinID:KRH73081.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0002336BFF	UniProt:I1JI24	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr2:+:43843555..43844926

Molecular Weight (calculated)

28576.5 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.566

Length

253 amino acids

Sequence
(BLAST)

001: MALNSILRKS GSFARALAVS GQLTKNNHLG HRTLLSTAIS QHQHQDSLVP RFHFSSVASK KKPTSDENLL RLIESEIECA QETDDHNAAE EVPGNFPFKI
101: IDSPGQQTIT LERMYQDEEI KVEVHMPDLV TGEENDDDND NDSERVTQSS IPLSISVLKK GGPYLEFNCV GYPDEIVIDG LSVKNPDLTE DQVAYEGPDF
201: QGLDENLQKS FHRYLEIRGI KPSTINFLHE YMINKDSKEY LVWLNKLKSF VQA

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.