Factsheet for Os01t0143300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
cytosol 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 19010998
cytosol: 19685898
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Os02t0758000-01	AT4G25200.1	21798944
AT5G02050.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G071700.1	Wheat	mitochondrion	74.24	75.68
TraesCS3A01G059200.1	Wheat	mitochondrion	74.24	75.68
HORVU3Hr1G011460.1	Barley	mitochondrion	71.97	74.8
HORVU0Hr1G006190.1	Barley	cytosol	50.38	74.72
EES00334	Sorghum	mitochondrion, plastid	74.24	73.68
Zm00001d039883_P001	Maize	mitochondrion	67.8	70.75
Os01t0143700-00	Rice	mitochondrion	56.82	57.92
GSMUA_Achr4P16890_001	Banana	mitochondrion	57.2	57.41
HORVU3Hr1G085260.1	Barley	cytosol	32.95	55.06
VIT_13s0019g02350.t01	Wine grape	mitochondrion	50.0	52.17
Solyc03g079930.2.1	Tomato	plastid	49.62	50.78
PGSC0003DMT400055876	Potato	mitochondrion, plastid	48.86	50.59
CDX70103	Canola	mitochondrion	45.83	47.45
Bra009157.1-P	Field mustard	mitochondrion	45.08	47.41
KRH73081	Soybean	mitochondrion	45.08	47.04
KRH15056	Soybean	mitochondrion	44.7	46.64
CDX98894	Canola	mitochondrion	45.45	46.51
AT2G39795.1	Thale cress	mitochondrion	43.18	45.6
Bra005873.1-P	Field mustard	mitochondrion	45.08	45.59
CDY11346	Canola	mitochondrion	45.08	45.59
AT5G05990.1	Thale cress	mitochondrion	44.7	45.56
KRH49169	Soybean	endoplasmic reticulum	43.18	45.06
KRH00042	Soybean	nucleus	43.18	44.88
Bra005013.1-P	Field mustard	mitochondrion	42.05	44.76
AT3G55605.1	Thale cress	mitochondrion	43.18	44.19
CDX74831	Canola	mitochondrion	41.67	44.18
CDX80981	Canola	mitochondrion	43.18	44.02
CDY20481	Canola	mitochondrion	41.29	43.95
Bra014733.1-P	Field mustard	mitochondrion	40.53	41.31
CDY38743	Canola	cytosol	23.86	41.18
CDX76083	Canola	mitochondrion	40.53	41.15
HORVU3Hr1G011490.1	Barley	cytosol	20.45	40.6
CDY65769	Canola	mitochondrion, plastid	39.77	40.54
PGSC0003DMT400022948	Potato	mitochondrion	37.12	39.04
Os01t0143800-01	Rice	plastid	40.15	38.55
Solyc09g011250.2.1	Tomato	mitochondrion	36.36	38.25
CDX80800	Canola	mitochondrion	37.12	37.84
CDY55117	Canola	mitochondrion, plastid	36.36	37.07
Bra005705.1-P	Field mustard	mitochondrion, plastid	36.36	37.07
AT5G02050.1	Thale cress	mitochondrion, plastid	37.12	36.7
AT2G39790.1	Thale cress	mitochondrion, plastid	32.2	35.42
Bra029081.1-P	Field mustard	plastid	30.68	35.37
TraesCS3B01G072000.1	Wheat	mitochondrion	35.98	35.19
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	37.12	35.0
CDY47064	Canola	plastid	32.58	34.96
Bra029083.1-P	Field mustard	mitochondrion	25.0	34.74
CDY38740	Canola	plastid	31.82	34.71
TraesCS3D01G059800.1	Wheat	mitochondrion	37.88	34.01
TraesCS3D01G059700.1	Wheat	mitochondrion	35.61	33.45
CDY47065	Canola	plastid	17.8	33.33
Bra029050.1-P	Field mustard	plastid	30.68	32.93
CDY43064	Canola	plastid	30.68	32.93
CDY70179	Canola	plastid	29.92	32.11
CDY70180	Canola	plastid	31.44	32.05
Os06t0326500-01	Rice	mitochondrion	32.2	31.6
Os05t0456000-01	Rice	mitochondrion	30.68	31.4
TraesCS3B01G071900.1	Wheat	mitochondrion	36.74	31.29
Bra029051.1-P	Field mustard	plastid	30.68	30.92
CDY43065	Canola	plastid	30.68	30.92
TraesCS3D01G059500.1	Wheat	mitochondrion	35.23	30.0
TraesCS3D01G059600.1	Wheat	mitochondrion	32.2	29.31
HORVU3Hr1G011580.1	Barley	mitochondrion	18.18	29.27
Os09t0557400-01	Rice	mitochondrion	23.48	27.68
Os08t0439900-01	Rice	mitochondrion	21.21	24.03
HORVU3Hr1G011510.1	Barley	plastid	35.98	23.46
Bra029082.1-P	Field mustard	plastid	13.26	21.34

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	EntrezGene:4325458	ProteinID:BAB16464.1	ProteinID:BAB40119.1	ProteinID:BAF03910.1
ProteinID:BAS70338.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf	EnsemblPlantsGene:Os01g0143300	EnsemblPlants:Os01t0143300-01
PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	UniProt:Q9FU80	SUPFAM:SSF54529	UniParc:UPI00000A815B
RefSeq:XP_015621917.1	SEG:seg	:	:	:	:

Description

Similar to Glycine-rich protein (Fragment). (Os01t0143300-01)

Coordinates

chr1:-:2357871..2360437

Molecular Weight (calculated)

29438.3 Da

IEP (calculated)

4.238

GRAVY (calculated)

-0.533

Length

264 amino acids

Sequence
(BLAST)

001: MALFAAARRA ATSTLPLLRA SASAAGTTRG AAALLRPLAA AAAARPQPRS MPFSSAPSTR PSSDGELLRI IDAEIKFAEE SDDHDRVEEI PDNFPFKISD
101: EKGFNSITLT RTYQGENIEV LVSMPSLVTG DEPDRENEAD EDRNEDDQEE ETQKAPKSSI PLTVTISKGE EGPSLEFICT AYPDEILIDA LSVMPSESGE
201: DEMITYEGPD FNDLDENLQR AFHKYLEMRG ITPMATNFLH EYMINKDSRE YLIWLRRLKD FVRN

Best Arabidopsis Sequence Match ( AT5G05990.1 )
(BLAST)

001: MATLVRRAAS RFVGSYWKNR SFVYSLLDQS ASGRRRHLTP SVDRNVPFTT STKKRASPTD PLLRIIEEEI GYAEKADDYH RVEETPSGFP FEMEDKPGGK
101: IVTLTREYEG ETVKVEVHMT NLVTGDKEDD EDDEEEAENE EDEDEDKPLK PKQSNVPLLV TLSKKTGPSL EFRCTAFPDR IAIKDMWVTF PDDPSKDELA
201: YEGPSFRVLD EKLRKAFHRY IEIRGIKPSM INFLHEYMIN KDSREHLLWL KSLKNFVKY

Arabidopsis Description

AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.