Factsheet for GSMUA_Achr4P16890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G006190.1	Barley	cytosol	43.73	64.61
Zm00001d039883_P001	Maize	mitochondrion	58.17	60.47
EES00334	Sorghum	mitochondrion, plastid	60.46	59.77
HORVU3Hr1G011460.1	Barley	mitochondrion	56.65	58.66
TraesCS3A01G059200.1	Wheat	mitochondrion	57.03	57.92
TraesCS3B01G071700.1	Wheat	mitochondrion	56.65	57.53
VIT_13s0019g02350.t01	Wine grape	mitochondrion	55.13	57.31
Os01t0143300-01	Rice	mitochondrion	57.41	57.2
Solyc03g079930.2.1	Tomato	plastid	50.57	51.55
KRH15056	Soybean	mitochondrion	48.67	50.59
PGSC0003DMT400055876	Potato	mitochondrion, plastid	48.67	50.2
KRH73081	Soybean	mitochondrion	47.91	49.8
Bra009157.1-P	Field mustard	mitochondrion	45.25	47.41
KRH00042	Soybean	nucleus	45.63	47.24
Bra005013.1-P	Field mustard	mitochondrion	44.49	47.18
KRH49169	Soybean	endoplasmic reticulum	45.25	47.04
CDX74831	Canola	mitochondrion	44.11	46.59
HORVU3Hr1G085260.1	Barley	cytosol	27.76	46.2
CDY20481	Canola	mitochondrion	43.35	45.97
CDX70103	Canola	mitochondrion	44.49	45.88
AT2G39795.1	Thale cress	mitochondrion	43.35	45.6
CDX98894	Canola	mitochondrion	44.49	45.35
AT3G55605.1	Thale cress	mitochondrion	44.11	44.96
CDY11346	Canola	mitochondrion	43.73	44.06
Bra005873.1-P	Field mustard	mitochondrion	43.73	44.06
Os01t0143700-00	Rice	mitochondrion	43.35	44.02
AT5G05990.1	Thale cress	mitochondrion	42.97	43.63
AT5G02050.1	Thale cress	mitochondrion, plastid	44.11	43.45
Bra005705.1-P	Field mustard	mitochondrion, plastid	42.59	43.24
CDX80981	Canola	mitochondrion	42.59	43.24
CDY55117	Canola	mitochondrion, plastid	42.59	43.24
CDX80800	Canola	mitochondrion	42.21	42.86
Bra014733.1-P	Field mustard	mitochondrion	41.06	41.7
CDX76083	Canola	mitochondrion	41.06	41.54
CDY65769	Canola	mitochondrion, plastid	40.3	40.93
CDY38743	Canola	cytosol	23.19	39.87
GSMUA_Achr5P23790_001	Banana	mitochondrion	38.78	37.5
Os05t0456000-01	Rice	mitochondrion	36.5	37.21
EES19636	Sorghum	mitochondrion	36.12	37.11
Solyc09g011250.2.1	Tomato	mitochondrion	35.36	37.05
PGSC0003DMT400022948	Potato	mitochondrion	35.36	37.05
CDY47065	Canola	plastid	19.77	36.88
Os01t0143800-01	Rice	plastid	38.02	36.36
AT2G39790.1	Thale cress	mitochondrion, plastid	33.08	36.25
TraesCS1D01G281100.1	Wheat	mitochondrion	34.6	36.11
HORVU1Hr1G072660.2	Barley	mitochondrion	34.98	35.94
Bra029081.1-P	Field mustard	plastid	31.18	35.81
HORVU3Hr1G011490.1	Barley	cytosol	17.87	35.34
EES00333	Sorghum	plastid	36.5	35.29
TraesCS3A01G059600.1	Wheat	plastid	36.12	34.93
GSMUA_AchrUn_...	Banana	cytosol	39.92	34.88
TraesCS3D01G059900.1	Wheat	plastid	35.74	34.81
TraesCS3B01G072200.1	Wheat	plastid	35.36	34.44
TraesCS1B01G291000.1	Wheat	mitochondrion	33.46	33.85
CDY47064	Canola	plastid	31.56	33.74
Bra029083.1-P	Field mustard	mitochondrion	24.33	33.68
Zm00001d008610_P001	Maize	plastid	34.98	33.58
CDY38740	Canola	plastid	30.8	33.47
Bra029050.1-P	Field mustard	plastid	31.18	33.33
CDY43064	Canola	plastid	31.18	33.33
CDY70180	Canola	plastid	32.32	32.82
HORVU3Hr1G011560.1	Barley	plastid	35.74	32.64
CDY70179	Canola	plastid	30.42	32.52
CDY43065	Canola	plastid	31.94	32.06
Bra029051.1-P	Field mustard	plastid	31.94	32.06
TraesCS3B01G072000.1	Wheat	mitochondrion	32.32	31.48
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	31.94	30.0
TraesCS3D01G059700.1	Wheat	mitochondrion	31.56	29.54
TraesCS3D01G059800.1	Wheat	mitochondrion	32.7	29.25
TraesCS3D01G059600.1	Wheat	mitochondrion	30.42	27.59
GSMUA_Achr10P...	Banana	mitochondrion	22.05	26.98
TraesCS3B01G071900.1	Wheat	mitochondrion	31.18	26.45
TraesCS3D01G059500.1	Wheat	mitochondrion	30.8	26.13
GSMUA_Achr5P22820_001	Banana	mitochondrion	21.67	25.11
HORVU3Hr1G011580.1	Barley	mitochondrion	15.21	24.39
Bra029082.1-P	Field mustard	plastid	13.31	21.34
HORVU3Hr1G011510.1	Barley	plastid	30.42	19.75

Protein Annotations

EnsemblPlants:GSMUA_Achr4P16890_001	EnsemblPlants:GSMUA_Achr4T16890_001	EnsemblPlantsGene:GSMUA_Achr4G16890_001	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	SEG:seg	SUPFAM:SSF54529
UniParc:UPI0002949321	UniProt:M0SPK3	MapMan:35.1	:	:	:

Description

Putative Uncharacterized protein At2g39795, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr4G16890_001]

Coordinates

chr4:+:15504006..15505249

Molecular Weight (calculated)

29498.3 Da

IEP (calculated)

4.345

GRAVY (calculated)

-0.534

Length

263 amino acids

Sequence
(BLAST)

001: MAFSAALRRA ASAAAPVAVR FLWRGHQANR STLIHILSPR TTIGERTAFP FSSAACFSSA AKKPATDADL VRVIESEIKC ALESDDHDRV EEVPDGFPFE
101: IQDEKGMNTV TLKRSFQGEN IEVIVSMPSL VTGEEPDHDR VGDDDNEDGD QEEKPGQSSV PLTVNISKGN GPSLEFSCTA YADEVTIDSM SVRENKESDD
201: EMLAYEGPDF NDLDENLQKA FYKYLEIRGI SPMTTNFLHE YMINKDSREY LWWLKNLKQF IQN

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.