Factsheet for PGSC0003DMT400067216

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065800.2.1	Tomato	mitochondrion	94.49	94.49
AT4G31930.1	Thale cress	mitochondrion	52.97	53.42
VIT_04s0008g05940.t01	Wine grape	mitochondrion	53.39	50.4
CDX68804	Canola	cytosol	25.0	49.58
CDY13466	Canola	mitochondrion	50.42	48.57
KRH15786	Soybean	mitochondrion	48.73	48.52
KRH05267	Soybean	mitochondrion	47.88	48.29
Bra023971.1-P	Field mustard	plastid	50.85	47.81
CDX72338	Canola	plastid	50.0	47.2
PGSC0003DMT400036809	Potato	mitochondrion	42.37	43.48
GSMUA_Achr10P...	Banana	mitochondrion	38.98	42.79
GSMUA_Achr5P22820_001	Banana	mitochondrion	39.41	40.97
Os09t0557400-01	Rice	mitochondrion	34.75	36.61
KXG36169	Sorghum	mitochondrion	36.44	36.44
TraesCS2B01G542100.1	Wheat	mitochondrion	33.47	35.59
TraesCS5B01G360700.1	Wheat	mitochondrion	35.17	35.17
TraesCS2A01G514500.1	Wheat	mitochondrion	33.47	35.11
TraesCS5D01G367500.2	Wheat	mitochondrion	34.75	34.6
Os08t0439900-01	Rice	mitochondrion	33.9	34.33
EES15053	Sorghum	mitochondrion	33.05	33.77
TraesCS2D01G516100.1	Wheat	mitochondrion	32.63	32.91
Zm00001d032163_P001	Maize	mitochondrion	31.36	32.17
TraesCS5A01G358200.1	Wheat	mitochondrion	33.9	29.85
PGSC0003DMT400022948	Potato	mitochondrion	25.42	23.9
PGSC0003DMT400055876	Potato	mitochondrion, plastid	23.31	21.57
HORVU5Hr1G088460.2	Barley	mitochondrion	25.0	21.45
HORVU2Hr1G113990.2	Barley	plastid	14.41	18.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400067216	EnsemblPlantsGene:PGSC0003DMG400026135	EntrezGene:102578899	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF14	PFAM:PF02330	PGSC:PGSC0003DMG400026135	RefSeq:XP_006353663.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0002949304	UniProt:M1CGW4	MapMan:35.2	:

Description

Mitochondrial glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026135]

Coordinates

chr6:+:45886844..45890319

Molecular Weight (calculated)

27110.2 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.438

Length

236 amino acids

Sequence
(BLAST)

001: MAAFLRASRR SLFSSCGILY SHGQQSSLHS SKHIFQFSRS HASQAIQKSP FESNILRILR NEIEYQLDYA PPHPPVSKFN TFMVEDRPGE QWVTLRRKFG
101: EDEHIKIEAT MIDGAINVPK ANDENLGEDV RLHISVLVDI WKGEGSEFLE FVCSSWPNSL EIQKVYLLRS DSSRAQPYMG PNVKDLNSGF RDGLNEFLKA
201: RGVDDELSAF LHEFMMNKDR IEAIGWLRKI QSFIEN

Best Arabidopsis Sequence Match ( AT4G31930.1 )
(BLAST)

001: MALLLRTLQK SRISPSHSSR TLISWVRCKS LLPNHQSRDV TTSPAKSPFR SNILRIIRNE IEYQSDYAPP HQPATEFKSF SVEDCPGEQC IVMKGKFGED
101: EDIKMEATMF DGFMNVPRAG LDASGHDVRL HISLLVDISK VDGSEEIEFL CSVWPNRIEI RKLYKLRRNK ITGQPYMGPN FGNLKYDFQT AIREFLRVRG
201: IDAELCFFLH EYMMNKDRIE LIQWLRKLNS FISQ

Arabidopsis Description

AT4g31930/F10N7_260 [Source:UniProtKB/TrEMBL;Acc:Q9AST4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.