Factsheet for VIT_04s0008g05940.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065800.2.1	Tomato	mitochondrion	51.6	54.66
PGSC0003DMT400067216	Potato	mitochondrion	50.4	53.39
VIT_09s0002g09050.t01	Wine grape	cytosol	40.4	52.33
KRH05267	Soybean	mitochondrion	46.8	50.0
KRH15786	Soybean	mitochondrion	46.8	49.37
AT4G31930.1	Thale cress	mitochondrion	45.2	48.29
CDX68804	Canola	cytosol	22.8	47.9
GSMUA_Achr5P22820_001	Banana	mitochondrion	42.4	46.7
GSMUA_Achr10P...	Banana	mitochondrion	38.4	44.65
CDY13466	Canola	mitochondrion	43.2	44.08
CDX72338	Canola	plastid	43.6	43.6
Bra023971.1-P	Field mustard	plastid	43.6	43.43
Os09t0557400-01	Rice	mitochondrion	35.2	39.29
TraesCS2B01G542100.1	Wheat	mitochondrion	34.0	38.29
EES15053	Sorghum	mitochondrion	35.2	38.1
Zm00001d032163_P001	Maize	mitochondrion	34.0	36.96
TraesCS5B01G360700.1	Wheat	mitochondrion	34.8	36.86
TraesCS5D01G367500.2	Wheat	mitochondrion	34.4	36.29
TraesCS2A01G514500.1	Wheat	mitochondrion	32.4	36.0
Os08t0439900-01	Rice	mitochondrion	32.8	35.19
KXG36169	Sorghum	mitochondrion	32.4	34.32
TraesCS2D01G516100.1	Wheat	mitochondrion	31.6	33.76
TraesCS5A01G358200.1	Wheat	mitochondrion	34.4	32.09
VIT_13s0019g02350.t01	Wine grape	mitochondrion	29.2	28.85
HORVU2Hr1G113990.2	Barley	plastid	17.6	23.66
HORVU5Hr1G088460.2	Barley	mitochondrion	22.0	20.0

Protein Annotations

EntrezGene:100245704	wikigene:100245704	Gene3D:3.10.280.10	MapMan:35.1	ProteinID:CBI21087	ProteinID:CBI21087.3
UniProt:D7SUY8	EMBL:FN595231	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	EntrezGene:LOC100245704	wikigene:LOC100245704	InterPro:MAM33
InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF14	SUPFAM:SSF54529	UniParc:UPI00015C885B
ArrayExpress:VIT_04s0008g05940	EnsemblPlantsGene:VIT_04s0008g05940	EnsemblPlants:VIT_04s0008g05940.t01	RefSeq:XP_002285343	RefSeq:XP_002285343.1	:

Description

No Description!

Coordinates

chr4:-:5634581..5639620

Molecular Weight (calculated)

29394.3 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.458

Length

250 amino acids

Sequence
(BLAST)

001: MARFIRAVQR TLRLPPLQRS SKTLIHGLQL PSLQSHNATS KFIFQTRSYQ NSFEILKSPF ESNVLRILRN EIEYLTEDGP PNQPPRIFNS FTVEDHPGQQ
101: WVTLRSKFRE KEDIKIDVTM FDGCIFIPKL DDDFNENDIT GQELRPHISL LVDISKGEDC DMLEFVCSAW PDSLEIQKVF IYRHGRLLPR PWLGPGFKSL
201: DYKLQNALCE FLEERGVNDE LSVFLHEYMM NKDRTELIQW LRNVKSFVEK

Best Arabidopsis Sequence Match ( AT4G31930.1 )
(BLAST)

001: MALLLRTLQK SRISPSHSSR TLISWVRCKS LLPNHQSRDV TTSPAKSPFR SNILRIIRNE IEYQSDYAPP HQPATEFKSF SVEDCPGEQC IVMKGKFGED
101: EDIKMEATMF DGFMNVPRAG LDASGHDVRL HISLLVDISK VDGSEEIEFL CSVWPNRIEI RKLYKLRRNK ITGQPYMGPN FGNLKYDFQT AIREFLRVRG
201: IDAELCFFLH EYMMNKDRIE LIQWLRKLNS FISQ

Arabidopsis Description

AT4g31930/F10N7_260 [Source:UniProtKB/TrEMBL;Acc:Q9AST4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.