Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28044 | Canola | cytosol | 70.05 | 76.0 |
| CDY35937 | Canola | nucleus | 69.12 | 70.75 |
| VIT_00s0269g00010.t01 | Wine grape | nucleus | 51.61 | 70.44 |
| VIT_00s0174g00120.t01 | Wine grape | nucleus | 62.21 | 54.22 |
| AT2G43280.1 | Thale cress | cytosol | 39.17 | 41.26 |
| Solyc09g057870.2.1 | Tomato | cytosol | 31.8 | 40.83 |
| AT4G12850.1 | Thale cress | cytosol, extracellular, nucleus | 31.34 | 36.96 |
| AT3G59470.2 | Thale cress | cytosol | 35.94 | 29.66 |
Protein Annotations
| MapMan:15.5.46 | EntrezGene:819938 | ProteinID:AEE74550.1 | ArrayExpress:AT3G07500 | EnsemblPlantsGene:AT3G07500 | RefSeq:AT3G07500 |
| TAIR:AT3G07500 | RefSeq:AT3G07500-TAIR-G | EnsemblPlants:AT3G07500.1 | TAIR:AT3G07500.1 | Unigene:At.71201 | EMBL:BT004031 |
| EMBL:BT005083 | ncoils:Coil | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 | GO:GO:0042753 | GO:GO:0045893 |
| RefSeq:NP_187406.2 | PFAM:PF03101 | PO:PO:0000293 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF46 | UniProt:Q84JA7 |
| UniParc:UPI000000C243 | SEG:seg | : | : | : | : |
Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
Coordinates
chr3:+:2392216..2393778
Molecular Weight (calculated)
25316.2 Da
IEP (calculated)
7.970
GRAVY (calculated)
-0.790
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.