Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99562 | Soybean | cytosol | 58.7 | 49.32 |
| KRH46568 | Soybean | cytosol | 34.78 | 45.07 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 46.74 | 41.95 |
| AT2G43280.1 | Thale cress | cytosol | 42.93 | 38.35 |
| Solyc09g057880.2.1 | Tomato | nucleus | 45.65 | 32.18 |
| AT3G07500.1 | Thale cress | nucleus | 36.96 | 31.34 |
| AT3G59470.2 | Thale cress | cytosol | 37.5 | 26.24 |
Protein Annotations
| MapMan:15.5.46 | EntrezGene:826897 | ProteinID:AEE83193.2 | ArrayExpress:AT4G12850 | EnsemblPlantsGene:AT4G12850 | RefSeq:AT4G12850 |
| TAIR:AT4G12850 | RefSeq:AT4G12850-TAIR-G | EnsemblPlants:AT4G12850.1 | TAIR:AT4G12850.1 | ncoils:Coil | UniProt:F4JRH5 |
| InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_193021.2 |
| PFAM:PF03101 | PO:PO:0000293 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF80 | UniParc:UPI00084924E9 | SEG:seg |
Description
Far-red impaired responsive (FAR1) family protein [Source:TAIR;Acc:AT4G12850]
Coordinates
chr4:+:7536974..7539048
Molecular Weight (calculated)
21382.5 Da
IEP (calculated)
8.465
GRAVY (calculated)
-0.727
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTGDLKLDE PYVGLKFESE EEAKDFYVEY SKRLGFVVRM MQRRRSGIDG RTLARRLGCN KQGFGPNNQR SSSSSSSSRE GCKATILVKM EKSGKWVVTR
101: FIKEHNHSLQ FIGSSSYDSF ADKERKIKEL TEEIECQDRL CDVYRDRLVS FIDNVEHYTE ELSLKVRDIV ENVKKLECQI QTRA
101: FIKEHNHSLQ FIGSSSYDSF ADKERKIKEL TEEIECQDRL CDVYRDRLVS FIDNVEHYTE ELSLKVRDIV ENVKKLECQI QTRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.