CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69788	Canola	nucleus	93.57	98.5
CDX67797	Canola	nucleus	77.5	91.56
CDX98376	Canola	nucleus	76.79	90.72
AT3G59470.2	Thale cress	cytosol	77.5	82.51
PGSC0003DMT400069495	Potato	nucleus	50.36	56.18
VIT_05s0102g00690.t01	Wine grape	cytosol	52.14	54.68
KRH24623	Soybean	nucleus	49.29	52.47
KRH10126	Soybean	nucleus	50.36	47.96
KRH29624	Soybean	nucleus	48.93	46.44
CDY23353	Canola	cytosol	11.79	40.74
CDY30396	Canola	cytosol	11.79	40.74
CDY28044	Canola	cytosol	28.21	39.5
CDY35937	Canola	nucleus	28.93	38.21
CDY23354	Canola	cytosol, mitochondrion, plastid	25.0	29.17
CDY30397	Canola	cytosol, plastid	26.43	29.13

Protein Annotations

EnsemblPlants:CDY06001	EnsemblPlantsGene:GSBRNA2T00121844001	GO:A0A078EXV4	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	PFAM:PF03101	ProteinID:CDY06001	ProteinID:CDY06001.1	UniParc:UPI0004EF139F
MapMan:15.5.46	:	:	:	:	:

Description

BnaA09g37790D

Coordinates

chrLK031967:+:167749..171710

Molecular Weight (calculated)

32459.2 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.926

Length

280 amino acids

Sequence
(BLAST)

001: MRWCIKERRS VYIEMNVDFR IDNGDADGMM MTISVENHNE MGESSGQAMI EQDDDENHNE IGESSNQEMP LEQDEKVDPD SIPLAVSDMA EEEVQGGDEP
101: YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCRAMILIR KENSGKWVIT KFAKEHNHPL
201: MPGRVRRGCI YDQYPNEHDK IQELMQQLAA EKKRAATYKR HLEMLFEQIE QHNESLTKRI QHIVDNVRDL EQRDHQQNQV

Best Arabidopsis Sequence Match ( AT3G59470.2 )
(BLAST)

001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.