Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037724.1-P | Field mustard | cytosol | 33.5 | 82.72 |
| AT2G43280.1 | Thale cress | cytosol | 78.5 | 76.21 |
| CDY30397 | Canola | cytosol, plastid | 91.0 | 71.65 |
| CDY23354 | Canola | cytosol, mitochondrion, plastid | 84.5 | 70.42 |
| KRH62480 | Soybean | nucleus | 66.0 | 54.77 |
| KRH56435 | Soybean | nucleus | 65.5 | 54.36 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 49.5 | 48.29 |
| Solyc09g057880.2.1 | Tomato | nucleus | 45.0 | 34.48 |
| Bra003377.1-P | Field mustard | nucleus | 33.5 | 28.27 |
Protein Annotations
| EnsemblPlants:Bra037723.1 | EnsemblPlants:Bra037723.1-P | EnsemblPlantsGene:Bra037723 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil |
| PANTHER:PTHR31669 | PANTHER:PTHR31669:SF46 | PFAM:PF03101 | UniParc:UPI0002543C95 | UniProt:M4F9G0 | MapMan:15.5.46 |
Description
AT2G43280 (E=7e-092) | far-red impaired responsive family protein / FAR1 family protein
Coordinates
chrA04:+:18061458..18062129
Molecular Weight (calculated)
23526.3 Da
IEP (calculated)
9.189
GRAVY (calculated)
-0.787
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDLTIEPR EGTEFESEEA AKMFYDDYSR SLGFVMRVMS CRRSERDGRI LARRFGCNKE VRCVSVRGKY GPVRKPRQST REGCKAMVHV KYDRSGKWVV
101: TKFVKEHNHP LVVEPRQARQ SLDEKDKRIQ ELTIELRNKK RLCAAYKEQL DAFAKIVEEY SNRMSKRVES VVENLKEFEH IELELLCSKQ DAIYKPALNV
101: TKFVKEHNHP LVVEPRQARQ SLDEKDKRIQ ELTIELRNKK RLCAAYKEQL DAFAKIVEEY SNRMSKRVES VVENLKEFEH IELELLCSKQ DAIYKPALNV
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.