Factsheet for VIT_05s0102g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0174g00140.t01	Wine grape	cytosol	45.34	44.44
VIT_05s0102g00410.t01	Wine grape	cytosol	33.6	43.01
VIT_05s0102g00440.t01	Wine grape	cytosol	40.49	40.65
VIT_18s0001g06550.t01	Wine grape	cytosol	17.0	17.57
GSMUA_Achr5P14700_001	Banana	cytosol	29.96	16.37
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	11.34	16.18
VIT_00s0174g00130.t01	Wine grape	cytosol	13.36	16.1
VIT_05s0102g00390.t01	Wine grape	nucleus	12.96	15.61
VIT_00s0174g00090.t01	Wine grape	cytosol	11.34	15.22
VIT_05s0102g00470.t01	Wine grape	cytosol	11.74	14.72
VIT_00s0174g00120.t01	Wine grape	nucleus	13.77	13.65
VIT_18s0001g06680.t01	Wine grape	cytosol	18.62	13.03
VIT_05s0102g00690.t01	Wine grape	cytosol	11.74	10.86
TraesCS4B01G220300.2	Wheat	nucleus	28.34	10.26
Zm00001d028472_P001	Maize	nucleus	27.94	10.07
Os03t0255400-01	Rice	nucleus	28.34	10.03
TraesCS4A01G083800.1	Wheat	nucleus	27.94	9.97
KXG39753	Sorghum	cytosol	27.94	9.86
HORVU4Hr1G062460.2	Barley	nucleus	26.72	9.84
TraesCS4D01G220600.2	Wheat	cytosol, nucleus	27.94	9.82
VIT_00s0269g00010.t01	Wine grape	nucleus	5.26	8.18
VIT_18s0117g00390.t01	Wine grape	nucleus	22.27	8.04
VIT_18s0117g00140.t01	Wine grape	nucleus	19.84	7.87
GSMUA_Achr2P10090_001	Banana	nucleus	12.55	5.1

Protein Annotations

EntrezGene:100250984	wikigene:100250984	MapMan:15.5.46	EMBL:AM465459	ProteinID:CAN68120	ProteinID:CAN68120.1
ProteinID:CCB59836	ProteinID:CCB59836.1	ncoils:Coil	UniProt:F6HYS2	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EMBL:FN596500	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	EntrezGene:LOC100250984	wikigene:LOC100250984	PFAM:PF03101
PANTHER:PTHR31669	PANTHER:PTHR31669:SF83	UniParc:UPI00019834DB	ArrayExpress:VIT_05s0102g00400	EnsemblPlantsGene:VIT_05s0102g00400	EnsemblPlants:VIT_05s0102g00400.t01
RefSeq:XP_002265053	RefSeq:XP_002265053.2	RefSeq:XP_010650574.1	:	:	:

Description

No Description!

Coordinates

chr5:+:22369478..22378722

Molecular Weight (calculated)

28889.8 Da

IEP (calculated)

5.472

GRAVY (calculated)

-0.964

Length

247 amino acids

Sequence
(BLAST)

001: MASTSGQGFN PSRNYRRWLD ETFDGHETAE DELSDSLDGN DDMVQQSIDN LPVSLEPLEP CVGMEFESAE DAREFYEMYG RRMGFTIRNN RTRRSLKDNS
101: IIGREFVCSK EGFRVEKYAN REHRILPSRP ITREGCNAML RIAAKDEGKW AIYGFVKEHN HELNPSKMPP RRSHRIAFCE DQKDLKIREL STELHRERKK
201: SAAYQEQLQT ILKYIEEHTH RLSLKVEIVV NNLRELESEE QDCSDSD

Best Arabidopsis Sequence Match ( AT3G07500.1 )
(BLAST)

001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.