Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0102g00400.t01 | Wine grape | nucleus | 16.37 | 29.96 |
| VIT_05s0102g00410.t01 | Wine grape | cytosol | 12.61 | 29.53 |
| KRH23208 | Soybean | nucleus | 16.59 | 29.3 |
| VIT_00s0174g00140.t01 | Wine grape | cytosol | 16.15 | 28.97 |
| VIT_05s0102g00440.t01 | Wine grape | cytosol | 14.38 | 26.42 |
| KRH10133 | Soybean | nucleus | 15.93 | 26.37 |
| GSMUA_Achr2P10090_001 | Banana | nucleus | 9.07 | 6.74 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P14700_001 | EnsemblPlants:GSMUA_Achr5T14700_001 | EnsemblPlantsGene:GSMUA_Achr5G14700_001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF79 | PFAM:PF03101 | SEG:seg | UniParc:UPI0002948E11 | UniProt:M0SYJ9 | MapMan:15.5.46 |
Description
Putative FAR1 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G14700_001]
Coordinates
chr5:+:10640632..10645650
Molecular Weight (calculated)
49849.4 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.376
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIITSLDED TKMILTLDEG RIVSSQGDMI LEPYVGMEFG SEEAAKTFYG LYARHVGFRV RISRYTRSRR DNSIISRRIV CSREGFREIR ANESLYVKRP
101: RMITRIGCKA MIIVKKMSGK WVVTKFEKEH NHVLPPSKKD PCHAGKFSNS QGAGRVSNET EIDRFSTGTK GNSQESLTVL YNQLCYEAIK YAQEGATTEH
201: TYNVAMASLK EAAEKVAAVK RNAGITAQTG VASGRTRQAF LVSTESSIGS LVQVKSFHNL QSQDKARELK PQKQPVNFVL LPSGFLTDSN SSTCSTEAPF
301: VFNVTADCLH GTQPIQTVNI TNPNTVCKQS NNTTILFPER LFGSDSEGSD LPEEEKVELH KLDTAPEIAK SHQKSQKNGA GLSSTTQSSG KKISMGSSEV
401: KLGYPALPVT VYMPVVGSIA ETFAGSYIIF SSFLCICNPE DRLPMYDHQG LM
101: RMITRIGCKA MIIVKKMSGK WVVTKFEKEH NHVLPPSKKD PCHAGKFSNS QGAGRVSNET EIDRFSTGTK GNSQESLTVL YNQLCYEAIK YAQEGATTEH
201: TYNVAMASLK EAAEKVAAVK RNAGITAQTG VASGRTRQAF LVSTESSIGS LVQVKSFHNL QSQDKARELK PQKQPVNFVL LPSGFLTDSN SSTCSTEAPF
301: VFNVTADCLH GTQPIQTVNI TNPNTVCKQS NNTTILFPER LFGSDSEGSD LPEEEKVELH KLDTAPEIAK SHQKSQKNGA GLSSTTQSSG KKISMGSSEV
401: KLGYPALPVT VYMPVVGSIA ETFAGSYIIF SSFLCICNPE DRLPMYDHQG LM
001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.