Factsheet for Os06t0698748-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0256400-01
Os01t0922800-01
Os02t0747400-01
Os02t0758000-01
Os03t0122600-01
Os06t0108500-01
Os06t0219500-00
Os06t0226700-01
Os06t0492700-00
Os08t0531900-01
Os10t0536100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24550.1	Os01t0922800-01	AT2G45660.1	21798944
AT2G24550.1	Os03t0122600-01	AT2G45660.1	21798944
AT2G24550.1	Os06t0108500-01	AT2G45660.1	21798944
AT2G24550.1	Os08t0531900-01	AT2G45660.1	21798944
AT2G24550.1	Os10t0536100-01	AT2G45660.1	21798944
AT2G24550.1	Os02t0747400-01	AT3G47620.1	21798944
AT2G24550.1	Os06t0226700-01	AT3G47620.1	21798944
AT2G24550.1	Os01t0256400-01	AT4G15930.1	21798944
AT2G24550.1	Os06t0492700-00	AT4G15930.1	21798944
AT2G24550.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G24550.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G325100.1	Wheat	nucleus	51.32	51.77
TraesCS7D01G416800.1	Wheat	nucleus	49.56	50.45
TraesCS7A01G424800.1	Wheat	nucleus	50.0	50.22
EER88891	Sorghum	nucleus	46.49	48.18
Zm00001d014648_P001	Maize	nucleus	37.28	46.7
Zm00001d036499_P001	Maize	nucleus	38.16	40.09
CDY68667	Canola	cytosol	23.25	35.33
GSMUA_Achr7P15940_001	Banana	nucleus	31.58	32.58
Os09t0499000-01	Rice	nucleus	34.65	30.5
GSMUA_Achr3P05640_001	Banana	nucleus	31.14	30.47
Os08t0516900-01	Rice	nucleus, plasma membrane	33.77	29.5
GSMUA_Achr9P13850_001	Banana	nucleus	26.75	27.11
VIT_01s0113g00410.t01	Wine grape	mitochondrion, nucleus	19.74	26.16
Bra007841.1-P	Field mustard	nucleus	26.75	25.0
CDX76805	Canola	nucleus	25.88	24.18
CDY20324	Canola	nucleus	26.75	23.64
Bra032085.1-P	Field mustard	nucleus	26.75	23.64
CDY45582	Canola	nucleus	25.88	23.41
AT2G24550.1	Thale cress	nucleus	25.0	23.27
Solyc08g068970.2.1	Tomato	nucleus	17.98	23.16
Bra036527.1-P	Field mustard	nucleus	22.81	22.71
CDY19822	Canola	nucleus	22.81	22.51
CDX87106	Canola	nucleus	22.37	22.17
Bra031516.1-P	Field mustard	nucleus	19.74	21.95
Bra024004.1-P	Field mustard	nucleus	20.61	21.86
AT4G31510.1	Thale cress	nucleus	20.18	21.5
CDY13436	Canola	nucleus	20.18	21.5
PGSC0003DMT400086234	Potato	nucleus	16.23	21.02
KRH61944	Soybean	nucleus	23.25	20.87
Bra020475.1-P	Field mustard	nucleus	19.3	20.37
KRH52604	Soybean	nucleus	22.37	20.24
CDX72307	Canola	nucleus	18.86	20.09
CDY23302	Canola	nucleus	19.3	20.0
CDY05462	Canola	nucleus	18.86	20.0
Bra010233.1-P	Field mustard	nucleus	19.3	20.0
CDY05394	Canola	nucleus	18.86	19.63
AT5G24890.1	Thale cress	nucleus	20.61	19.58
CDY36435	Canola	nucleus	18.86	19.55
CDX88142	Canola	nucleus	19.3	19.38
Bra009802.1-P	Field mustard	nucleus	19.3	19.38
CDY55465	Canola	nucleus	19.3	18.8
KRH04949	Soybean	extracellular, vacuole	22.81	16.2

Protein Annotations

EnsemblPlants:Os06t0698748-02	EnsemblPlantsGene:Os06g0698748	EntrezGene:9272115	ncoils:Coil	PANTHER:PTHR33172	PANTHER:PTHR33172:SF3
ProteinID:BAD54669.1	ProteinID:BAH93704.1	ProteinID:BAS99313.1	RefSeq:XP_015644442.1	SEG:seg	UniParc:UPI00004470BE
UniProt:Q5Z4U8	MapMan:35.2	:	:	:	:

Description

Similar to cDNA clone:J023083M02, full insert sequence. (Os06t0698748-01);Similar to MTD1. (Os06t0698748-02)

Coordinates

chr6:+:29342120..29343842

Molecular Weight (calculated)

22811.4 Da

IEP (calculated)

4.764

GRAVY (calculated)

-0.411

Length

228 amino acids

Sequence
(BLAST)

001: MSVVAAAAAA VAVAPPSSPY GMCGGGGGGG GARKRKDVVQ QLEDLAGGVV GDDGGGGGGG GDVVHGLFVL ETVEEKAEEE EEERSSIGAD SEDEQDDGEE
101: EVESKASSAA VAAETCRRKT KTKCGGGGGG ALACLDALDD ALPIKRGLSN FFSGKSRSFA NLQDVAAAGA TTASLAKPEN PFNKRRRILR CSSIRRVSST
201: SLTALPPFLP PHHHPPPPDD GGGGGGNG

Best Arabidopsis Sequence Match ( AT2G24550.1 )
(BLAST)

001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE

Arabidopsis Description

At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.