Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 3
- peroxisome 1
- mitochondrion 1
- unclear 1
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014648_P001 | Maize | nucleus | 48.18 | 58.24 |
| Zm00001d036499_P001 | Maize | nucleus | 50.91 | 51.61 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 50.45 | 49.12 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 50.0 | 49.11 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 48.64 | 47.14 |
| Os06t0698748-02 | Rice | nucleus | 48.18 | 46.49 |
| CDY68667 | Canola | cytosol | 25.91 | 38.0 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 33.64 | 31.76 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 31.82 | 31.67 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 30.91 | 30.22 |
| EER99130 | Sorghum | nucleus | 34.09 | 29.18 |
| Bra007841.1-P | Field mustard | nucleus | 29.55 | 26.64 |
| KXG25581 | Sorghum | nucleus | 33.64 | 26.62 |
| CDY45582 | Canola | nucleus | 30.45 | 26.59 |
| AT2G24550.1 | Thale cress | nucleus | 29.55 | 26.53 |
| CDX76805 | Canola | nucleus | 29.09 | 26.23 |
| AT4G31510.1 | Thale cress | nucleus | 25.0 | 25.7 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 20.0 | 25.58 |
| Bra031516.1-P | Field mustard | nucleus | 23.64 | 25.37 |
| Bra032085.1-P | Field mustard | nucleus | 29.55 | 25.19 |
| Bra024004.1-P | Field mustard | nucleus | 24.55 | 25.12 |
| CDY05394 | Canola | nucleus | 25.0 | 25.11 |
| PGSC0003DMT400086234 | Potato | nucleus | 20.0 | 25.0 |
| CDY20324 | Canola | nucleus | 29.09 | 24.81 |
| CDY13436 | Canola | nucleus | 24.09 | 24.77 |
| Bra036527.1-P | Field mustard | nucleus | 25.45 | 24.45 |
| CDX87106 | Canola | nucleus | 25.45 | 24.35 |
| Solyc08g068970.2.1 | Tomato | nucleus | 19.55 | 24.29 |
| Bra020475.1-P | Field mustard | nucleus | 23.64 | 24.07 |
| CDY05462 | Canola | nucleus | 23.18 | 23.72 |
| CDY19822 | Canola | nucleus | 24.55 | 23.38 |
| CDY23302 | Canola | nucleus | 23.18 | 23.18 |
| Bra010233.1-P | Field mustard | nucleus | 23.18 | 23.18 |
| CDX72307 | Canola | nucleus | 22.27 | 22.9 |
| CDY36435 | Canola | nucleus | 22.73 | 22.73 |
| Bra009802.1-P | Field mustard | nucleus | 23.18 | 22.47 |
| CDX88142 | Canola | nucleus | 23.18 | 22.47 |
| CDY55465 | Canola | nucleus | 23.64 | 22.22 |
| AT5G24890.1 | Thale cress | nucleus | 24.09 | 22.08 |
| KRH61944 | Soybean | nucleus | 25.0 | 21.65 |
| KRH52604 | Soybean | nucleus | 24.09 | 21.03 |
| KRH04949 | Soybean | extracellular, vacuole | 23.18 | 15.89 |
Protein Annotations
| EnsemblPlants:EER88891 | EnsemblPlantsGene:SORBI_3010G248200 | EntrezGene:8063818 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF3 | ProteinID:EER88891 |
| ProteinID:EER88891.1 | RefSeq:XP_002437524.1 | SEG:seg | unigene:Sbi.11846 | UniParc:UPI0001A89249 | UniProt:C5Z8U6 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:58827900..58830677
Molecular Weight (calculated)
22246.7 Da
IEP (calculated)
4.957
GRAVY (calculated)
-0.360
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVAAVGPG AAAAAAAAAG AYGHGQPLCG GGGGGARKRK DVGVVQDQEA GLRGSHVGAA APRRGAGLFV LETVEEEAEA ERLSSIGAVS EDEEEDGEEV
101: NSGGTSSSTT KGAALASMDM DALDDALPIK RGLSNFFSGK SRSFANLQDA ASAVTSARDL AKPENPFNKR RRVLRCCSIR RVASTSLTEL PPFFLPPTTD
201: PGSTGDDDDG CGAGGRRHSG
101: NSGGTSSSTT KGAALASMDM DALDDALPIK RGLSNFFSGK SRSFANLQDA ASAVTSARDL AKPENPFNKR RRVLRCCSIR RVASTSLTEL PPFFLPPTTD
201: PGSTGDDDDG CGAGGRRHSG
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.