Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19822 | Canola | nucleus | 70.83 | 73.59 |
| Bra036527.1-P | Field mustard | nucleus | 69.58 | 72.93 |
| CDX87106 | Canola | nucleus | 69.17 | 72.17 |
| Bra009802.1-P | Field mustard | nucleus | 63.33 | 66.96 |
| CDX88142 | Canola | nucleus | 63.33 | 66.96 |
| CDY55465 | Canola | nucleus | 61.25 | 62.82 |
| CDY05394 | Canola | nucleus | 57.08 | 62.56 |
| Bra020475.1-P | Field mustard | nucleus | 55.83 | 62.04 |
| CDY05462 | Canola | nucleus | 55.42 | 61.86 |
| AT2G24550.1 | Thale cress | nucleus | 41.25 | 40.41 |
| AT4G31510.1 | Thale cress | nucleus | 34.58 | 38.78 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 25.83 | 36.05 |
| KRH52604 | Soybean | nucleus | 35.0 | 33.33 |
| KRH61944 | Soybean | nucleus | 35.0 | 33.07 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 29.58 | 30.47 |
| Solyc08g068970.2.1 | Tomato | nucleus | 22.08 | 29.94 |
| PGSC0003DMT400086234 | Potato | nucleus | 21.67 | 29.55 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 27.08 | 28.89 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 25.83 | 28.05 |
| KRH04949 | Soybean | extracellular, vacuole | 36.67 | 27.41 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 27.92 | 27.13 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 27.92 | 27.13 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 29.17 | 26.82 |
| Zm00001d014648_P001 | Maize | nucleus | 20.0 | 26.37 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 27.5 | 26.29 |
| Zm00001d049768_P001 | Maize | nucleus | 27.92 | 25.77 |
| Zm00001d021006_P001 | Maize | nucleus | 27.5 | 25.58 |
| Zm00001d031545_P001 | Maize | nucleus | 28.33 | 25.0 |
| KXG25581 | Sorghum | nucleus | 28.33 | 24.46 |
| EER99130 | Sorghum | nucleus | 25.83 | 24.12 |
| EER88891 | Sorghum | nucleus | 22.08 | 24.09 |
| Os09t0499000-01 | Rice | nucleus | 25.83 | 23.94 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 27.5 | 23.91 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 27.08 | 23.64 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 26.67 | 23.36 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 26.67 | 23.1 |
| Zm00001d036499_P001 | Maize | nucleus | 20.42 | 22.58 |
| Zm00001d006059_P001 | Maize | nucleus | 24.17 | 22.14 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 19.58 | 20.8 |
| Os06t0698748-02 | Rice | nucleus | 19.58 | 20.61 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 19.17 | 20.54 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 19.17 | 20.26 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 27.08 | 19.76 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832558 | UniProt:A0A178UF40 | ProteinID:AED93375.1 | ArrayExpress:AT5G24890 | EnsemblPlantsGene:AT5G24890 |
| RefSeq:AT5G24890 | TAIR:AT5G24890 | RefSeq:AT5G24890-TAIR-G | EnsemblPlants:AT5G24890.1 | TAIR:AT5G24890.1 | EMBL:AY088175 |
| EMBL:BT020475 | EMBL:BT023742 | GO:GO:0008150 | RefSeq:NP_197871.1 | ProteinID:OAO92393.1 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | UniProt:Q8L9W8 | UniParc:UPI00000A8EE4 | SEG:seg |
Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
Coordinates
chr5:-:8557737..8559488
Molecular Weight (calculated)
26577.8 Da
IEP (calculated)
4.113
GRAVY (calculated)
-1.102
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.