Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99130 | Sorghum | nucleus | 75.19 | 76.65 |
| Zm00001d021006_P001 | Maize | nucleus | 71.37 | 72.48 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 61.83 | 65.59 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 61.45 | 65.18 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 61.83 | 64.54 |
| Os09t0499000-01 | Rice | nucleus | 58.02 | 58.69 |
| Zm00001d049768_P001 | Maize | nucleus | 45.8 | 46.15 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 57.63 | 45.9 |
| Zm00001d031545_P001 | Maize | nucleus | 46.95 | 45.22 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 36.26 | 42.99 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 35.11 | 40.89 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 36.26 | 40.77 |
| Zm00001d014648_P001 | Maize | nucleus | 23.66 | 34.07 |
| CDY68667 | Canola | cytosol | 18.7 | 32.67 |
| Zm00001d036499_P001 | Maize | nucleus | 26.34 | 31.8 |
| Solyc08g068970.2.1 | Tomato | nucleus | 19.47 | 28.81 |
| KRH52604 | Soybean | nucleus | 27.48 | 28.57 |
| KRH61944 | Soybean | nucleus | 26.72 | 27.56 |
| AT4G31510.1 | Thale cress | nucleus | 22.14 | 27.1 |
| Bra009802.1-P | Field mustard | nucleus | 22.9 | 26.43 |
| CDX88142 | Canola | nucleus | 22.9 | 26.43 |
| CDY45582 | Canola | nucleus | 25.19 | 26.19 |
| CDX72307 | Canola | nucleus | 21.37 | 26.17 |
| AT2G24550.1 | Thale cress | nucleus | 24.43 | 26.12 |
| CDY05462 | Canola | nucleus | 21.37 | 26.05 |
| CDY19822 | Canola | nucleus | 22.9 | 25.97 |
| Bra020475.1-P | Field mustard | nucleus | 21.37 | 25.93 |
| Bra031516.1-P | Field mustard | nucleus | 20.23 | 25.85 |
| PGSC0003DMT400086234 | Potato | nucleus | 17.18 | 25.57 |
| Bra036527.1-P | Field mustard | nucleus | 22.14 | 25.33 |
| Bra032085.1-P | Field mustard | nucleus | 24.81 | 25.19 |
| CDY05394 | Canola | nucleus | 20.99 | 25.11 |
| Bra007841.1-P | Field mustard | nucleus | 23.28 | 25.0 |
| CDY23302 | Canola | nucleus | 20.99 | 25.0 |
| Bra010233.1-P | Field mustard | nucleus | 20.99 | 25.0 |
| CDY20324 | Canola | nucleus | 24.43 | 24.81 |
| CDY55465 | Canola | nucleus | 22.14 | 24.79 |
| CDX87106 | Canola | nucleus | 21.76 | 24.78 |
| CDY13436 | Canola | nucleus | 20.23 | 24.77 |
| Bra024004.1-P | Field mustard | nucleus | 20.23 | 24.65 |
| CDX76805 | Canola | nucleus | 22.52 | 24.18 |
| AT5G24890.1 | Thale cress | nucleus | 22.14 | 24.17 |
| CDY36435 | Canola | nucleus | 20.23 | 24.09 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 15.27 | 23.26 |
| KRH04949 | Soybean | extracellular, vacuole | 24.43 | 19.94 |
Protein Annotations
| EnsemblPlants:Zm00001d006059_P001 | EnsemblPlants:Zm00001d006059_T001 | EnsemblPlantsGene:Zm00001d006059 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF4 | ProteinID:ONM22688.1 |
| SEG:seg | UniParc:UPI000220A2AE | UniProt:A0A1D6ESK2 | MapMan:35.2 | : | : |
Description
MTD1
Coordinates
chr2:-:196801414..196802728
Molecular Weight (calculated)
27229.1 Da
IEP (calculated)
4.608
GRAVY (calculated)
-0.673
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAVAEARP RYGFPGSGKG GSGGGGGGHG KEADMAAVGK RRSDGFFIEE VAEEEVLTDT SSVGAPSPSG SSIGENSSSE AGGDDVDEEV ESKLKEDDAL
101: DCLDALEDSL PVKKGLSSFY SGKSRSFTSL AEATSTVAAA KELAKPENPF NKRRRILANW SRRASCSSLA TAAYLPPLLG PDHAVAEGDE GEEDDSDSDD
201: VECSQLPPPH RGKNVRDARA LPPLRLGGAG MRRRNGPNGG LGSFRSPRSF SLSDLHSSAE GE
101: DCLDALEDSL PVKKGLSSFY SGKSRSFTSL AEATSTVAAA KELAKPENPF NKRRRILANW SRRASCSSLA TAAYLPPLLG PDHAVAEGDE GEEDDSDSDD
201: VECSQLPPPH RGKNVRDARA LPPLRLGGAG MRRRNGPNGG LGSFRSPRSF SLSDLHSSAE GE
001: MDCVESYLSG DNSDESPVMH TWFSPSPSPS DSSSSPSSSA SSSIGRNSDD GEKSSEDGGD DAGENEVESP YKGPLEMMES LEQVLPVRKG ISKYYSGKSK
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
101: SFTNLTAEAA SALTSSSSMK DLAKPENPYS RRRRNLLCHQ IWENNKTTPR GGISKKHVMS SSRSALTLAM AVAAGVMTGE GSSSGGDSSP GSSPTTSGSP
201: PRQLHHHQHQ MKKLPPLYPR SQGSFGNLTS SQSSLGFCAW RSFSVADFPR CFPATASGIG FNDS
Arabidopsis Description
At5g21940 [Source:UniProtKB/TrEMBL;Acc:Q9C593]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.