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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • mitochondrion 2
  • nucleus 3
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45660.1 Zm00001d007949_P001 AT1G26310.1 11439126
AT2G45660.1 Zm00001d013259_P002 AT1G26310.1 11439126
AT2G45660.1 Zm00001d018667_P003 AT1G26310.1 11439126
AT2G45660.1 Zm00001d022088_P004 AT1G26310.1 11439126
AT2G45660.1 Zm00001d023736_P001 AT1G26310.1 11439126
AT2G45660.1 Zm00001d034045_P003 AT1G26310.1 11439126
AT2G45660.1 Zm00001d007949_P001 AT1G26310.1 15805477
AT2G45660.1 Zm00001d013259_P002 AT1G26310.1 15805477
AT2G45660.1 Zm00001d018667_P003 AT1G26310.1 15805477
AT2G45660.1 Zm00001d022088_P004 AT1G26310.1 15805477
AT2G45660.1 Zm00001d023736_P001 AT1G26310.1 15805477
AT2G45660.1 Zm00001d034045_P003 AT1G26310.1 15805477
AT2G45660.1 Zm00001d007949_P001 AT1G69120.1 11439126
AT2G45660.1 Zm00001d013259_P002 AT1G69120.1 11439126
AT2G45660.1 Zm00001d018667_P003 AT1G69120.1 11439126
AT2G45660.1 Zm00001d022088_P004 AT1G69120.1 11439126
AT2G45660.1 Zm00001d023736_P001 AT1G69120.1 11439126
AT2G45660.1 Zm00001d034045_P003 AT1G69120.1 11439126
AT2G45660.1 Zm00001d007949_P001 AT1G69120.1 15805477
AT2G45660.1 Zm00001d013259_P002 AT1G69120.1 15805477
AT2G45660.1 Zm00001d018667_P003 AT1G69120.1 15805477
AT2G45660.1 Zm00001d022088_P004 AT1G69120.1 15805477
AT2G45660.1 Zm00001d023736_P001 AT1G69120.1 15805477
AT2G45660.1 Zm00001d034045_P003 AT1G69120.1 15805477
AT2G45660.1 Zm00001d007949_P001 AT1G69120.1 21798944
AT2G45660.1 Zm00001d013259_P002 AT1G69120.1 21798944
AT2G45660.1 Zm00001d018667_P003 AT1G69120.1 21798944
AT2G45660.1 Zm00001d022088_P004 AT1G69120.1 21798944
AT2G45660.1 Zm00001d023736_P001 AT1G69120.1 21798944
AT2G45660.1 Zm00001d034045_P003 AT1G69120.1 21798944
AT2G45660.1 Zm00001d025479_P001 AT1G71692.1 15805477
AT2G45660.1 Zm00001d035053_P002 AT1G71692.1 15805477
AT2G45660.1 Zm00001d049692_P001 AT1G71692.1 15805477
AT2G45660.1 Zm00001d028217_P001 AT2G03710.1 15805477
AT2G45660.1 Zm00001d045231_P002 AT2G03710.1 15805477
AT2G45660.1 Zm00001d048082_P001 AT2G03710.1 15805477
AT2G45660.1 Zm00001d025062_P001 AT2G18040.1 20129060
AT2G45660.1 Zm00001d018142_P001 AT2G22540.1 15805477
AT2G45660.1 Zm00001d027955_P001 AT2G22540.1 15805477
AT2G45660.1 Zm00001d027957_P001 AT2G22540.1 15805477
AT2G45660.1 Zm00001d044899_P001 AT2G22540.1 15805477
AT2G45660.1 Zm00001d052180_P001 AT2G22540.1 15805477
AT2G45660.1 Zm00001d017614_P003 AT2G45650.1 15805477
AT2G45660.1 Zm00001d051465_P002 AT2G45650.1 15805477
AT2G45660.1 Zm00001d027425_P001 AT2G45660.1 15805477
AT2G45660.1 Zm00001d031625_P001 AT2G45660.1 15805477
AT2G45660.1 Zm00001d039913_P002 AT2G45660.1 15805477
AT2G45660.1 Zm00001d042315_P001 AT2G45660.1 15805477
AT2G45660.1 Zm00001d047355_P001 AT2G45660.1 15805477
AT2G45660.1 Zm00001d047356_P002 AT2G45660.1 15805477
AT2G45660.1 Zm00001d048474_P001 AT2G45660.1 15805477
AT2G45660.1 Zm00001d006094_P001 AT3G02310.1 15805477
AT2G45660.1 Zm00001d021057_P001 AT3G02310.1 15805477
AT2G45660.1 Zm00001d031620_P001 AT3G02310.1 15805477
AT2G45660.1 Zm00001d005029_P001 AT3G54220.1 19228333
AT2G45660.1 Zm00001d052380_P001 AT3G54220.1 19228333
AT2G45660.1 Zm00001d003409_P001 AT3G57230.1 15805477
AT2G45660.1 Zm00001d016957_P003 AT3G57230.1 15805477
AT2G45660.1 Zm00001d017932_P002 AT3G57230.1 15805477
AT2G45660.1 Zm00001d050897_P002 AT3G57230.1 15805477
AT2G45660.1 Zm00001d017614_P003 AT3G61120.1 15805477
AT2G45660.1 Zm00001d051465_P002 AT3G61120.1 15805477
AT2G45660.1 Zm00001d018142_P001 AT4G24540.1 15805477
AT2G45660.1 Zm00001d027955_P001 AT4G24540.1 15805477
AT2G45660.1 Zm00001d027957_P001 AT4G24540.1 15805477
AT2G45660.1 Zm00001d044899_P001 AT4G24540.1 15805477
AT2G45660.1 Zm00001d052180_P001 AT4G24540.1 15805477
AT2G45660.1 Zm00001d050300_P002 AT5G04600.1 21798944
AT2G45660.1 Zm00001d000046_P001 AT5G47100.1 21798944
AT2G45660.1 Zm00001d029976_P004 AT5G47100.1 21798944
AT2G45660.1 Zm00001d029856_P001 AT5G47570.1 21798944
AT2G45660.1 Zm00001d047119_P001 AT5G47570.1 21798944
AT2G45660.1 Zm00001d007949_P001 AT5G60910.1 15805477
AT2G45660.1 Zm00001d013259_P002 AT5G60910.1 15805477
AT2G45660.1 Zm00001d018667_P003 AT5G60910.1 15805477
AT2G45660.1 Zm00001d022088_P004 AT5G60910.1 15805477
AT2G45660.1 Zm00001d023736_P001 AT5G60910.1 15805477
AT2G45660.1 Zm00001d034045_P003 AT5G60910.1 15805477
AT2G45660.1 Zm00001d007949_P001 AT5G60910.1 21798944
AT2G45660.1 Zm00001d013259_P002 AT5G60910.1 21798944
AT2G45660.1 Zm00001d018667_P003 AT5G60910.1 21798944
AT2G45660.1 Zm00001d022088_P004 AT5G60910.1 21798944
AT2G45660.1 Zm00001d023736_P001 AT5G60910.1 21798944
AT2G45660.1 Zm00001d034045_P003 AT5G60910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU93352 Sorghum nucleus 87.93 87.55
Zm00001d027425_P001 Maize nucleus 82.76 84.21
Solyc10g017640.1.1 Tomato nucleus 21.12 80.33
Zm00001d047355_P001 Maize nucleus 25.86 80.0
KRH48297 Soybean nucleus 28.88 75.28
Os03t0122600-01 Rice nucleus 70.26 70.87
TraesCS5A01G515500.1 Wheat nucleus 60.78 64.09
TraesCS4D01G341700.1 Wheat nucleus 60.78 63.51
TraesCS4B01G346700.1 Wheat nucleus 60.34 63.06
Zm00001d042315_P001 Maize nucleus 18.1 60.0
Bra039324.1-P Field mustard nucleus 51.72 56.34
CDY37054 Canola nucleus 51.72 56.34
CDY27368 Canola nucleus 50.86 55.4
AT2G45660.1 Thale cress nucleus 50.86 55.14
CDY69077 Canola nucleus 50.43 54.93
CDX74755 Canola nucleus 50.43 54.93
Bra004928.1-P Field mustard nucleus 50.43 54.93
Bra000393.1-P Field mustard nucleus 50.0 54.46
KRH00625 Soybean nucleus 48.71 54.07
CDY53886 Canola nucleus 49.57 53.99
CDY60689 Canola nucleus 49.14 53.52
KRH40554 Soybean nucleus 47.84 52.61
PGSC0003DMT400026576 Potato nucleus 46.55 50.47
PGSC0003DMT400000028 Potato nucleus 48.28 50.0
Zm00001d031625_P001 Maize nucleus 17.24 50.0
Zm00001d047356_P002 Maize nucleus 24.14 47.06
KRH65189 Soybean nucleus 46.55 45.57
KRH48299 Soybean nucleus 21.98 37.23
Zm00001d039913_P002 Maize nucleus 25.86 34.48
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EntrezGene:542042EMBL:AF112148EMBL:AJ430642ProteinID:AQL09886.1
EMBL:BT055216ncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983EMBL:HQ858775InterPro:IPR002100
InterPro:IPR002487InterPro:IPR036879EMBL:KM101125InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF341
UniProt:Q9FR85SMART:SM00432SUPFAM:SSF55455InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sf
UniParc:UPI0000061DDAEnsemblPlantsGene:Zm00001d048474EnsemblPlants:Zm00001d048474_P001EnsemblPlants:Zm00001d048474_T001::
Description
MADS1MADS1
Coordinates
chr9:+:156960598..156980195
Molecular Weight (calculated)
26405.7 Da
IEP (calculated)
9.892
GRAVY (calculated)
-0.841
Length
232 amino acids
Sequence
(BLAST)
001: MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG SAQKTIERYR TYTKDNVSNK TVQQDIERVK ADADGLSKRL
101: EALEAYKRKL LGERLEDCSI EELHSLEVKL EKSLHCIRGR KTELLEEQVR KLKQKEMSLR KSNEDLREKC KKQPPVPMAS APPRAPAVDN VEDGHREPKD
201: DGMDVETELY IGLPGRDYRS SKDKAAVAVR SG
Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.