Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU93352 | Sorghum | nucleus | 87.93 | 87.55 |
Zm00001d027425_P001 | Maize | nucleus | 82.76 | 84.21 |
Solyc10g017640.1.1 | Tomato | nucleus | 21.12 | 80.33 |
Zm00001d047355_P001 | Maize | nucleus | 25.86 | 80.0 |
KRH48297 | Soybean | nucleus | 28.88 | 75.28 |
Os03t0122600-01 | Rice | nucleus | 70.26 | 70.87 |
TraesCS5A01G515500.1 | Wheat | nucleus | 60.78 | 64.09 |
TraesCS4D01G341700.1 | Wheat | nucleus | 60.78 | 63.51 |
TraesCS4B01G346700.1 | Wheat | nucleus | 60.34 | 63.06 |
Zm00001d042315_P001 | Maize | nucleus | 18.1 | 60.0 |
Bra039324.1-P | Field mustard | nucleus | 51.72 | 56.34 |
CDY37054 | Canola | nucleus | 51.72 | 56.34 |
CDY27368 | Canola | nucleus | 50.86 | 55.4 |
AT2G45660.1 | Thale cress | nucleus | 50.86 | 55.14 |
CDY69077 | Canola | nucleus | 50.43 | 54.93 |
CDX74755 | Canola | nucleus | 50.43 | 54.93 |
Bra004928.1-P | Field mustard | nucleus | 50.43 | 54.93 |
Bra000393.1-P | Field mustard | nucleus | 50.0 | 54.46 |
KRH00625 | Soybean | nucleus | 48.71 | 54.07 |
CDY53886 | Canola | nucleus | 49.57 | 53.99 |
CDY60689 | Canola | nucleus | 49.14 | 53.52 |
KRH40554 | Soybean | nucleus | 47.84 | 52.61 |
PGSC0003DMT400026576 | Potato | nucleus | 46.55 | 50.47 |
PGSC0003DMT400000028 | Potato | nucleus | 48.28 | 50.0 |
Zm00001d031625_P001 | Maize | nucleus | 17.24 | 50.0 |
Zm00001d047356_P002 | Maize | nucleus | 24.14 | 47.06 |
KRH65189 | Soybean | nucleus | 46.55 | 45.57 |
KRH48299 | Soybean | nucleus | 21.98 | 37.23 |
Zm00001d039913_P002 | Maize | nucleus | 25.86 | 34.48 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:542042 | EMBL:AF112148 | EMBL:AJ430642 | ProteinID:AQL09886.1 |
EMBL:BT055216 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EMBL:HQ858775 | InterPro:IPR002100 |
InterPro:IPR002487 | InterPro:IPR036879 | EMBL:KM101125 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 |
UniProt:Q9FR85 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
UniParc:UPI0000061DDA | EnsemblPlantsGene:Zm00001d048474 | EnsemblPlants:Zm00001d048474_P001 | EnsemblPlants:Zm00001d048474_T001 | : | : |
Description
MADS1MADS1
Coordinates
chr9:+:156960598..156980195
Molecular Weight (calculated)
26405.7 Da
IEP (calculated)
9.892
GRAVY (calculated)
-0.841
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG SAQKTIERYR TYTKDNVSNK TVQQDIERVK ADADGLSKRL
101: EALEAYKRKL LGERLEDCSI EELHSLEVKL EKSLHCIRGR KTELLEEQVR KLKQKEMSLR KSNEDLREKC KKQPPVPMAS APPRAPAVDN VEDGHREPKD
201: DGMDVETELY IGLPGRDYRS SKDKAAVAVR SG
101: EALEAYKRKL LGERLEDCSI EELHSLEVKL EKSLHCIRGR KTELLEEQVR KLKQKEMSLR KSNEDLREKC KKQPPVPMAS APPRAPAVDN VEDGHREPKD
201: DGMDVETELY IGLPGRDYRS SKDKAAVAVR SG
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.