Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69077 | Canola | nucleus | 95.33 | 95.77 |
| Bra004928.1-P | Field mustard | nucleus | 95.33 | 95.77 |
| CDX74755 | Canola | nucleus | 95.33 | 95.77 |
| Bra000393.1-P | Field mustard | nucleus | 94.86 | 95.31 |
| CDY53886 | Canola | nucleus | 94.39 | 94.84 |
| CDY37054 | Canola | nucleus | 92.52 | 92.96 |
| Bra039324.1-P | Field mustard | nucleus | 92.52 | 92.96 |
| CDY60689 | Canola | nucleus | 92.06 | 92.49 |
| CDY27368 | Canola | nucleus | 92.06 | 92.49 |
| TraesCS1B01G214600.1 | Wheat | nucleus | 23.83 | 82.26 |
| Solyc10g017640.1.1 | Tomato | nucleus | 23.36 | 81.97 |
| Zm00001d047355_P001 | Maize | nucleus | 26.17 | 74.67 |
| KRH00625 | Soybean | nucleus | 70.09 | 71.77 |
| KRH40554 | Soybean | nucleus | 69.16 | 70.14 |
| TraesCS7D01G037000.1 | Wheat | cytosol | 18.69 | 65.57 |
| PGSC0003DMT400026576 | Potato | nucleus | 59.81 | 59.81 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 38.78 | 59.71 |
| PGSC0003DMT400000028 | Potato | nucleus | 62.15 | 59.38 |
| KRH65189 | Soybean | nucleus | 63.55 | 57.38 |
| AT5G62165.2 | Thale cress | nucleus | 56.07 | 57.14 |
| Zm00001d042315_P001 | Maize | nucleus | 18.69 | 57.14 |
| AT4G22950.1 | Thale cress | nucleus | 57.94 | 56.62 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 54.67 | 55.45 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 54.21 | 53.7 |
| AT4G11880.1 | Thale cress | nucleus | 54.67 | 52.94 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 53.27 | 52.29 |
| Zm00001d027425_P001 | Maize | nucleus | 54.21 | 50.88 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 54.67 | 50.87 |
| Os03t0122600-01 | Rice | nucleus | 54.67 | 50.87 |
| Zm00001d048474_P001 | Maize | nucleus | 55.14 | 50.86 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 51.87 | 50.45 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 52.34 | 50.45 |
| OQU93352 | Sorghum | nucleus | 54.21 | 49.79 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 53.27 | 49.57 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 51.4 | 49.55 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 35.51 | 49.35 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 52.8 | 48.92 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 51.4 | 48.25 |
| KXG39016 | Sorghum | nucleus | 50.93 | 48.23 |
| Os10t0536100-01 | Rice | nucleus | 50.47 | 46.35 |
| Zm00001d031625_P001 | Maize | nucleus | 17.29 | 46.25 |
| AT5G51860.1 | Thale cress | nucleus | 45.33 | 45.97 |
| AT5G51870.3 | Thale cress | nucleus | 46.73 | 43.67 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 21.5 | 42.99 |
| HORVU4Hr1G085450.1 | Barley | nucleus | 19.16 | 42.27 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 50.47 | 41.86 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 50.47 | 41.7 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 50.47 | 41.22 |
| TraesCS3A01G434700.1 | Wheat | nucleus | 19.63 | 41.18 |
| HORVU6Hr1G002330.14 | Barley | nucleus | 35.98 | 40.1 |
| Os06t0108500-01 | Rice | nucleus | 39.72 | 39.91 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 28.5 | 38.36 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 28.5 | 38.36 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 28.97 | 37.13 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 28.97 | 37.13 |
| TraesCS3B01G470000.1 | Wheat | nucleus | 28.97 | 37.13 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 28.97 | 37.13 |
| HORVU3Hr1G095080.3 | Barley | plastid | 19.63 | 36.21 |
| TraesCS4B01G351500.1 | Wheat | nucleus | 27.57 | 35.98 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 28.04 | 35.93 |
| TraesCS3B01G469700.1 | Wheat | nucleus | 27.57 | 35.33 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 27.1 | 34.73 |
| OQU86329 | Sorghum | nucleus | 27.57 | 34.5 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 26.64 | 34.34 |
| Os01t0922800-01 | Rice | nucleus | 25.23 | 32.93 |
| Os08t0531900-01 | Rice | nucleus | 28.04 | 32.79 |
| Zm00001d047356_P002 | Maize | nucleus | 18.22 | 32.77 |
| Zm00001d039913_P002 | Maize | nucleus | 26.64 | 32.76 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 25.23 | 32.53 |
| EES01980 | Sorghum | nucleus | 24.77 | 32.52 |
| HORVU4Hr1G085370.1 | Barley | nucleus | 16.36 | 32.41 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 21.5 | 29.87 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 27.57 | 29.21 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 28.04 | 28.99 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 25.23 | 27.84 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 26.64 | 26.03 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 24.77 | 25.85 |
| TraesCS7B01G158900.1 | Wheat | nucleus | 26.17 | 25.81 |
| KXG25532 | Sorghum | nucleus, plastid | 24.3 | 20.72 |
| HORVU3Hr1G095090.1 | Barley | cytosol, mitochondrion, nucleus | 28.5 | 18.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:819174 | UniProt:A0A178VZL4 | ProteinID:AAC06175.1 | ProteinID:AEC10583.1 |
| EMBL:AF385731 | Symbol:AGL20 | ArrayExpress:AT2G45660 | EnsemblPlantsGene:AT2G45660 | RefSeq:AT2G45660 | TAIR:AT2G45660 |
| RefSeq:AT2G45660-TAIR-G | EnsemblPlants:AT2G45660.1 | TAIR:AT2G45660.1 | EMBL:AY007726 | EMBL:AY093967 | Unigene:At.25546 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0000060 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 | GO:GO:0010077 | GO:GO:0030154 | GO:GO:0045893 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| RefSeq:NP_182090.1 | UniProt:O64645 | ProteinID:OAP11266.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009013 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000001181 | SEG:seg | : |
Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
Coordinates
chr2:-:18807505..18811125
Molecular Weight (calculated)
24534.3 Da
IEP (calculated)
9.428
GRAVY (calculated)
-0.849
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.