Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G014600.1 | Wheat | nucleus | 80.73 | 59.85 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 79.69 | 59.3 |
| Solyc10g017640.1.1 | Tomato | nucleus | 18.75 | 59.02 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 79.69 | 58.4 |
| KRH48297 | Soybean | nucleus | 24.48 | 52.81 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 27.08 | 48.6 |
| HORVU4Hr1G085450.1 | Barley | nucleus | 23.44 | 46.39 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 32.29 | 40.26 |
| Os06t0108500-01 | Rice | nucleus | 43.23 | 38.97 |
| HORVU3Hr1G095080.3 | Barley | plastid | 22.92 | 37.93 |
| CDY69077 | Canola | nucleus | 40.62 | 36.62 |
| Bra004928.1-P | Field mustard | nucleus | 40.62 | 36.62 |
| Bra039324.1-P | Field mustard | nucleus | 40.62 | 36.62 |
| CDX74755 | Canola | nucleus | 40.62 | 36.62 |
| CDY37054 | Canola | nucleus | 40.62 | 36.62 |
| AT2G45660.1 | Thale cress | nucleus | 40.1 | 35.98 |
| CDY53886 | Canola | nucleus | 39.58 | 35.68 |
| Bra000393.1-P | Field mustard | nucleus | 39.58 | 35.68 |
| CDY27368 | Canola | nucleus | 39.58 | 35.68 |
| KRH00625 | Soybean | nucleus | 38.54 | 35.41 |
| CDY60689 | Canola | nucleus | 39.06 | 35.21 |
| KRH40554 | Soybean | nucleus | 38.02 | 34.6 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 28.65 | 34.59 |
| HORVU4Hr1G085370.1 | Barley | nucleus | 18.23 | 32.41 |
| PGSC0003DMT400026576 | Potato | nucleus | 35.42 | 31.78 |
| PGSC0003DMT400000028 | Potato | nucleus | 36.46 | 31.25 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 25.0 | 31.17 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 26.56 | 30.54 |
| KRH65189 | Soybean | nucleus | 37.5 | 30.38 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 27.6 | 27.32 |
| KRH48299 | Soybean | nucleus | 14.06 | 19.71 |
| HORVU3Hr1G095090.1 | Barley | cytosol, mitochondrion, nucleus | 28.65 | 16.32 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287T556 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:HORVU6Hr1G002330 |
| EnsemblPlants:HORVU6Hr1G002330.14 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B4646FB | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:6262615..6269974
Molecular Weight (calculated)
19793.8 Da
IEP (calculated)
10.369
GRAVY (calculated)
-0.511
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSPEAAV PEGGEQQQIV XXXXXAAAAA KKGGGKRGRR EMRRIEDATS RQVTFSKRRS GLLKKAFELG VLCDAEVALI VFXXXXXTSG VAAARTLQRT
101: IDRYLNHTKG TSANQKTVEQ PAAGVEMCRS EATALKHKID AIEACQRKLS GEGLGSCSSH ELHELELQLE KSLSCIRQKK SSNRKCWIKS RS
101: IDRYLNHTKG TSANQKTVEQ PAAGVEMCRS EATALKHKID AIEACQRKLS GEGLGSCSSH ELHELELQLE KSLSCIRQKK SSNRKCWIKS RS
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.