Factsheet for Bra000393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra002403.1-P
Bra003919.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra006619.1-P
Bra007056.1-P
Bra007972.1-P
Bra009440.1-P
Bra010623.1-P
Bra011021.1-P
Bra011509.1-P
Bra011797.1-P
Bra012997.1-P
Bra014454.1-P
Bra016128.1-P
Bra016129.1-P
Bra017376.1-P
Bra017476.1-P
Bra017504.1-P
Bra017638.1-P
Bra019221.1-P
Bra019343.1-P
Bra020182.1-P
Bra020826.1-P
Bra021470.1-P
Bra022104.1-P
Bra022143.1-P
Bra024480.1-P
Bra024933.1-P
Bra025126.1-P
Bra026543.1-P
Bra028783.1-P
Bra029347.1-P
Bra029424.1-P
Bra030228.1-P
Bra035952.1-P
Bra038326.1-P
Bra038511.1-P
Bra039170.1-P
Bra039324.1-P
Bra039913.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45660.1	Bra011021.1-P	AT1G26310.1	11439126
AT2G45660.1	Bra011021.1-P	AT1G26310.1	15805477
AT2G45660.1	Bra004007.1-P	AT1G69120.1	11439126
AT2G45660.1	Bra004361.1-P	AT1G69120.1	11439126
AT2G45660.1	Bra038326.1-P	AT1G69120.1	11439126
AT2G45660.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G45660.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G45660.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G45660.1	Bra004007.1-P	AT1G69120.1	21798944
AT2G45660.1	Bra004361.1-P	AT1G69120.1	21798944
AT2G45660.1	Bra038326.1-P	AT1G69120.1	21798944
AT2G45660.1	Bra003919.1-P	AT1G71692.1	15805477
AT2G45660.1	Bra007972.1-P	AT1G71692.1	15805477
AT2G45660.1	Bra016128.1-P	AT1G71692.1	15805477
AT2G45660.1	Bra016129.1-P	AT1G71692.1	15805477
AT2G45660.1	Bra017376.1-P	AT2G03710.1	15805477
AT2G45660.1	Bra025126.1-P	AT2G03710.1	15805477
AT2G45660.1	Bra026543.1-P	AT2G03710.1	15805477
AT2G45660.1	Bra024480.1-P	AT2G18040.1	20129060
AT2G45660.1	Bra039913.1-P	AT2G18040.1	20129060
AT2G45660.1	Bra030228.1-P	AT2G22540.1	15805477
AT2G45660.1	Bra038511.1-P	AT2G22540.1	15805477
AT2G45660.1	Bra000392.1-P	AT2G45650.1	15805477
AT2G45660.1	Bra004927.1-P	AT2G45650.1	15805477
AT2G45660.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G45660.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G45660.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G45660.1	Bra021470.1-P	AT3G02310.1	15805477
AT2G45660.1	Bra039170.1-P	AT3G02310.1	15805477
AT2G45660.1	Bra007056.1-P	AT3G54220.1	19228333
AT2G45660.1	Bra011509.1-P	AT3G57230.1	15805477
AT2G45660.1	Bra017638.1-P	AT3G57230.1	15805477
AT2G45660.1	Bra014454.1-P	AT3G61120.1	15805477
AT2G45660.1	Bra029424.1-P	AT4G11880.1	15805477
AT2G45660.1	Bra019343.1-P	AT4G22950.1	15805477
AT2G45660.1	Bra020826.1-P	AT4G22950.1	15805477
AT2G45660.1	Bra019221.1-P	AT4G24540.1	15805477
AT2G45660.1	Bra010623.1-P	AT4G37940.1	15805477
AT2G45660.1	Bra011797.1-P	AT4G37940.1	15805477
AT2G45660.1	Bra009440.1-P	AT5G04600.1	21798944
AT2G45660.1	Bra028783.1-P	AT5G04600.1	21798944
AT2G45660.1	Bra002403.1-P	AT5G22290.1	21798944
AT2G45660.1	Bra006619.1-P	AT5G22290.1	21798944
AT2G45660.1	Bra020182.1-P	AT5G22290.1	21798944
AT2G45660.1	Bra017504.1-P	AT5G47100.1	21798944
AT2G45660.1	Bra022104.1-P	AT5G47100.1	21798944
AT2G45660.1	Bra017476.1-P	AT5G47570.1	21798944
AT2G45660.1	Bra022143.1-P	AT5G47570.1	21798944
AT2G45660.1	Bra024933.1-P	AT5G47570.1	21798944
AT2G45660.1	Bra012997.1-P	AT5G60910.1	15805477
AT2G45660.1	Bra029347.1-P	AT5G60910.1	15805477
AT2G45660.1	Bra035952.1-P	AT5G60910.1	15805477
AT2G45660.1	Bra012997.1-P	AT5G60910.1	21798944
AT2G45660.1	Bra029347.1-P	AT5G60910.1	21798944
AT2G45660.1	Bra035952.1-P	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53886	Canola	nucleus	99.53	99.53
AT2G45660.1	Thale cress	nucleus	95.31	94.86
Bra004928.1-P	Field mustard	nucleus	94.37	94.37
Bra039324.1-P	Field mustard	nucleus	92.02	92.02
TraesCS1B01G214600.1	Wheat	nucleus	23.94	82.26
Solyc10g017640.1.1	Tomato	nucleus	23.47	81.97
Zm00001d047355_P001	Maize	nucleus	26.29	74.67
KRH00625	Soybean	nucleus	69.95	71.29
KRH40554	Soybean	nucleus	69.01	69.67
TraesCS7D01G037000.1	Wheat	cytosol	18.78	65.57
Bra020826.1-P	Field mustard	nucleus	43.19	63.01
PGSC0003DMT400026576	Potato	nucleus	60.09	59.81
GSMUA_Achr2P11820_001	Banana	nucleus	38.97	59.71
PGSC0003DMT400000028	Potato	nucleus	61.5	58.48
Bra029424.1-P	Field mustard	nucleus	46.48	57.23
Zm00001d042315_P001	Maize	nucleus	18.78	57.14
KRH65189	Soybean	nucleus	62.91	56.54
GSMUA_Achr1P03630_001	Banana	nucleus	55.4	55.92
Bra019343.1-P	Field mustard	nucleus	55.87	54.34
Bra029281.1-P	Field mustard	nucleus	52.58	53.59
GSMUA_Achr5P10250_001	Banana	nucleus	53.99	53.24
TraesCS1B01G214500.1	Wheat	nucleus	52.58	51.38
Zm00001d048474_P001	Maize	nucleus	54.46	50.0
Os03t0122600-01	Rice	nucleus	53.99	50.0
Zm00001d027425_P001	Maize	nucleus	53.52	50.0
TraesCS1D01G203300.2	Wheat	nucleus	53.99	50.0
TraesCS4B01G346700.1	Wheat	nucleus	51.64	49.55
TraesCS5A01G515500.1	Wheat	nucleus	51.17	49.55
Bra028282.1-P	Field mustard	nucleus	46.95	49.51
OQU93352	Sorghum	nucleus	53.52	48.93
TraesCS1A01G199600.2	Wheat	nucleus	52.58	48.7
TraesCS4D01G341700.1	Wheat	nucleus	50.7	48.65
TraesCS1D01G203400.1	Wheat	nucleus	52.11	48.05
HORVU1Hr1G051660.10	Barley	nucleus	34.74	48.05
TraesCS1A01G199900.1	Wheat	nucleus	50.7	47.37
KXG39016	Sorghum	nucleus	50.23	47.35
Zm00001d031625_P001	Maize	nucleus	17.37	46.25
Bra029314.1-P	Field mustard	nucleus	40.38	45.99
Bra029154.1-P	Field mustard	nucleus	46.95	45.66
Os10t0536100-01	Rice	nucleus	49.77	45.49
Bra029155.1-P	Field mustard	nucleus	44.13	44.98
Bra028283.1-P	Field mustard	nucleus	41.78	44.72
Bra013891.1-P	Field mustard	nucleus	38.97	43.92
Bra012957.1-P	Field mustard	nucleus	43.19	43.6
HORVU6Hr1G002270.1	Barley	mitochondrion, nucleus	21.6	42.99
TraesCS6B01G017900.1	Wheat	nucleus	50.23	41.47
TraesCS6D01G014600.1	Wheat	nucleus	50.23	41.31
HORVU4Hr1G085450.1	Barley	nucleus	18.78	41.24
TraesCS3A01G434700.1	Wheat	nucleus	19.72	41.18
TraesCS6A01G011700.1	Wheat	nucleus	50.23	40.84
Bra010465.1-P	Field mustard	nucleus	35.68	40.64
Bra035907.1-P	Field mustard	nucleus	51.64	40.44
Os06t0108500-01	Rice	nucleus	39.91	39.91
HORVU6Hr1G002330.14	Barley	nucleus	35.68	39.58
HORVU3Hr1G095240.2	Barley	nucleus	28.64	38.36
TraesCS3D01G428000.1	Wheat	nucleus	28.64	38.36
HORVU3Hr1G095200.4	Barley	nucleus	29.58	37.72
TraesCS3A01G435000.1	Wheat	nucleus	29.11	37.13
TraesCS3B01G470000.1	Wheat	nucleus	29.11	37.13
TraesCS3D01G427900.1	Wheat	nucleus	28.64	36.53
TraesCS3A01G434400.1	Wheat	nucleus	28.64	36.53
HORVU3Hr1G095080.3	Barley	plastid	19.72	36.21
TraesCS3B01G469700.1	Wheat	nucleus	28.17	35.93
TraesCS3D01G427700.1	Wheat	mitochondrion, nucleus	27.23	34.94
TraesCS4B01G351500.1	Wheat	nucleus	26.76	34.76
TraesCS3A01G434900.1	Wheat	nucleus	27.23	34.73
OQU86329	Sorghum	nucleus	27.7	34.5
Os08t0531900-01	Rice	nucleus	28.64	33.33
Os01t0922800-01	Rice	nucleus	25.35	32.93
Zm00001d039913_P002	Maize	nucleus	26.76	32.76
TraesCS3A01G432900.1	Wheat	mitochondrion, nucleus	25.35	32.53
EES01980	Sorghum	nucleus	24.88	32.52
HORVU4Hr1G085370.1	Barley	nucleus	16.43	32.41
Zm00001d047356_P002	Maize	nucleus	17.84	31.93
HORVU7Hr1G054390.1	Barley	nucleus	21.6	29.87
TraesCS5A01G520200.1	Wheat	nucleus, plastid	27.23	28.71
TraesCS4D01G346300.1	Wheat	nucleus	27.7	28.5
HORVU7Hr1G054320.2	Barley	nucleus	25.35	27.84
TraesCS7D01G261900.1	Wheat	nucleus	26.76	26.03
TraesCS7A01G260900.1	Wheat	nucleus	24.88	25.85
TraesCS7B01G158900.1	Wheat	nucleus	26.29	25.81
KXG25532	Sorghum	nucleus, plastid	23.94	20.32
HORVU3Hr1G095090.1	Barley	cytosol, mitochondrion, nucleus	28.64	18.1

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra000393	EnsemblPlants:Bra000393.1	EnsemblPlants:Bra000393.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4C865
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000150999B	SEG:seg	:	:

Description

AT2G45660 (E=6e-092) AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20); transcription factor

Coordinates

chrA03:-:10898286..10900672

Molecular Weight (calculated)

24351.2 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.794

Length

213 amino acids

Sequence
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTVDRYL RHTKDRVSSK PVSEENMQHF KHEAANMMKK
101: IEQLEASKRK LLGEGIGSCS IEELQQIEQQ LEKSVKCVRA RKTQVFKEQI VQLKQKEKAL AAENEKLAEK WGSHEIEVWS NKNQESGRGD EDSSPSSEVE
201: TQLFIGLPCS SRK

Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK

Arabidopsis Description

SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.