Factsheet for Bra029314.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42874	Canola	nucleus	100.0	82.02
Bra013891.1-P	Field mustard	nucleus	73.8	73.02
Solyc06g035570.1.1	Tomato	nucleus	20.86	72.22
Bra012957.1-P	Field mustard	nucleus	73.8	65.4
VIT_16s0022g02400.t01	Wine grape	nucleus	26.2	62.03
Bra010465.1-P	Field mustard	nucleus	56.15	56.15
Bra028283.1-P	Field mustard	nucleus	57.75	54.27
Bra028282.1-P	Field mustard	nucleus	57.75	53.47
Bra029155.1-P	Field mustard	nucleus	56.15	50.24
Os03t0834466-00	Rice	nucleus	17.11	49.23
Bra020826.1-P	Field mustard	nucleus	37.97	48.63
Bra029154.1-P	Field mustard	nucleus	55.62	47.49
PGSC0003DMT400065060	Potato	nucleus	27.81	46.85
PGSC0003DMT400062319	Potato	nucleus	28.88	45.38
Bra029281.1-P	Field mustard	nucleus	48.66	43.54
Bra039324.1-P	Field mustard	nucleus	47.59	41.78
Os01t0903800-00	Rice	cytosol, nucleus	15.51	40.85
Bra004928.1-P	Field mustard	nucleus	46.52	40.85
Bra029424.1-P	Field mustard	nucleus	37.43	40.46
Bra000393.1-P	Field mustard	nucleus	45.99	40.38
GSMUA_Achr10P...	Banana	nucleus	42.78	39.6
GSMUA_Achr11P...	Banana	nucleus	43.85	39.42
KRH35396	Soybean	nucleus	44.92	39.25
KRG91427	Soybean	nucleus	43.85	38.32
Solyc03g006830.2.1	Tomato	nucleus	45.45	38.29
Bra019343.1-P	Field mustard	nucleus	43.85	37.44
GSMUA_Achr2P04340_001	Banana	nucleus	42.25	37.09
Bra035907.1-P	Field mustard	nucleus	45.45	31.25

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029314	EnsemblPlants:Bra029314.1	EnsemblPlants:Bra029314.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EKJ7	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF344	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00025459B8	:	:	:	:	:

Description

AT5G51860 (E=5e-047) | MADS-box protein (AGL72)

Coordinates

chrA02:-:25907371..25910250

Molecular Weight (calculated)

21986.8 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.613

Length

187 amino acids

Sequence
(BLAST)

001: MVKGKIEIKR IENLTSRQVT FSKRRKGLMK KAHELSVLCD AQVAAIVFSQ KGKLYEYASS DMKKMIERCE LHRREYFHEE RLQKEQQVQD LKDEITIMVN
101: SIELLQRHCR RLMGEDLDTC SVEELKEITI QIEKSLTIVR SRKFEEKPLW MQSRNLESEK NASSSGCENI HISNVETDLF IGLPRRV

Best Arabidopsis Sequence Match ( AT5G51860.1 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P

Arabidopsis Description

AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.