Factsheet for Bra029281.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30701	Canola	nucleus	100.0	100.0
AT5G62165.2	Thale cress	nucleus	86.12	85.71
Solyc06g035570.1.1	Tomato	nucleus	21.05	81.48
VIT_16s0022g02400.t01	Wine grape	nucleus	26.79	70.89
Bra035907.1-P	Field mustard	nucleus	81.34	62.5
Os03t0834466-00	Rice	nucleus	18.18	58.46
Bra028282.1-P	Field mustard	nucleus	54.55	56.44
Bra039324.1-P	Field mustard	nucleus	55.02	53.99
Bra029424.1-P	Field mustard	nucleus	44.02	53.18
PGSC0003DMT400065060	Potato	nucleus	28.23	53.15
Bra029155.1-P	Field mustard	nucleus	52.63	52.63
Bra000393.1-P	Field mustard	nucleus	53.59	52.58
Bra004928.1-P	Field mustard	nucleus	53.59	52.58
Os01t0903800-00	Rice	cytosol, nucleus	17.7	52.11
KRH35396	Soybean	nucleus	53.11	51.87
Bra029154.1-P	Field mustard	nucleus	54.07	51.6
GSMUA_Achr10P...	Banana	nucleus	49.76	51.49
KRG91427	Soybean	nucleus	52.63	51.4
Bra013891.1-P	Field mustard	nucleus	45.93	50.79
Bra020826.1-P	Field mustard	nucleus	35.41	50.68
Bra019343.1-P	Field mustard	nucleus	52.63	50.23
GSMUA_Achr11P...	Banana	nucleus	49.76	50.0
GSMUA_Achr2P04340_001	Banana	nucleus	50.72	49.77
Bra028283.1-P	Field mustard	nucleus	47.37	49.75
PGSC0003DMT400062319	Potato	nucleus	28.23	49.58
Bra012957.1-P	Field mustard	nucleus	49.76	49.29
Bra029314.1-P	Field mustard	nucleus	43.54	48.66
Solyc03g006830.2.1	Tomato	nucleus	51.2	48.2
Bra010465.1-P	Field mustard	nucleus	39.23	43.85

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029281	EnsemblPlants:Bra029281.1	EnsemblPlants:Bra029281.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EKG4
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002545BB3	SEG:seg	:	:

Description

AT5G62165 (E=5e-089) AGL42 | AGL42 (AGAMOUS LIKE 42); transcription factor

Coordinates

chrA02:+:26163766..26166542

Molecular Weight (calculated)

24745.9 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.761

Length

209 amino acids

Sequence
(BLAST)

001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSNS DMWKTIERYR KYTKDHETNN HDSEIYVQRL KEEASHMITK
101: IELLEFHKRK LLGQELASCS LEELQEIDSQ LQRSLAKVRA KKAQLFREQL EKLKAKEKQL LEENVRLHQK TVLEPWRGST DQQEKFRVID LNLEVETDLV
201: IGLPEKHCK

Best Arabidopsis Sequence Match ( AT5G62165.3 )
(BLAST)

001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC

Arabidopsis Description

AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.