Factsheet for Bra029155.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra020600.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51860.1	Bra020600.1-P	AT1G48150.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38881	Canola	nucleus	95.69	98.04
Bra028282.1-P	Field mustard	nucleus	86.12	89.11
CDY32614	Canola	nucleus	43.06	81.08
AT5G51860.1	Thale cress	nucleus	79.43	78.67
Solyc06g035570.1.1	Tomato	nucleus	19.62	75.93
VIT_16s0022g02400.t01	Wine grape	nucleus	24.88	65.82
Bra013891.1-P	Field mustard	nucleus	53.59	59.26
Bra029154.1-P	Field mustard	nucleus	59.81	57.08
Bra029314.1-P	Field mustard	nucleus	50.24	56.15
Bra028283.1-P	Field mustard	nucleus	52.63	55.28
Bra012957.1-P	Field mustard	nucleus	55.02	54.5
Bra029281.1-P	Field mustard	nucleus	52.63	52.63
PGSC0003DMT400062319	Potato	nucleus	28.71	50.42
Bra010465.1-P	Field mustard	nucleus	44.98	50.27
Os03t0834466-00	Rice	nucleus	15.31	49.23
PGSC0003DMT400065060	Potato	nucleus	24.4	45.95
Bra039324.1-P	Field mustard	nucleus	46.41	45.54
KRG91427	Soybean	nucleus	45.93	44.86
Bra004928.1-P	Field mustard	nucleus	44.98	44.13
Bra000393.1-P	Field mustard	nucleus	44.98	44.13
KRH35396	Soybean	nucleus	44.98	43.93
Solyc03g006830.2.1	Tomato	nucleus	45.93	43.24
Bra020826.1-P	Field mustard	nucleus	30.14	43.15
Bra029424.1-P	Field mustard	nucleus	35.41	42.77
GSMUA_Achr2P04340_001	Banana	nucleus	43.54	42.72
Os01t0903800-00	Rice	cytosol, nucleus	14.35	42.25
GSMUA_Achr11P...	Banana	nucleus	41.63	41.83
Bra019343.1-P	Field mustard	nucleus	43.06	41.1
GSMUA_Achr10P...	Banana	nucleus	39.71	41.09
Bra035907.1-P	Field mustard	nucleus	48.33	37.13

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra029155	EnsemblPlants:Bra029155.1	EnsemblPlants:Bra029155.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EK38
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00025400E7	:	:	:	:

Description

AT5G51860 (E=7e-090) | MADS-box protein (AGL72)

Coordinates

chrA03:+:6605925..6608084

Molecular Weight (calculated)

23897.1 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.540

Length

209 amino acids

Sequence
(BLAST)

001: MVRGKIQIKK IENTTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS DIQKTIKRYA EYKGEYFVAE SHPTEQYVQG LKKEMVTMVE
101: KIEMLEVHNQ KLMGKSLAFC SLKELQEIAT QIEKSLHIVR SRKAKLYEDE VEKLKAKGRE LKDERVRLSG RVGEEPSGMP MPSGSKEKED VETDLSIGFR
201: PDLNILLVP

Best Arabidopsis Sequence Match ( AT5G51860.2 )
(BLAST)

001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KVGERPMGMP SGSKEKEDVE TDLFIGFLKN
201: RP

Arabidopsis Description

AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.