Factsheet for Bra039170.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra002285.1-P
Bra004007.1-P
Bra004361.1-P
Bra004928.1-P
Bra006549.1-P
Bra007067.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra013364.1-P
Bra014822.1-P
Bra017638.1-P
Bra020093.1-P
Bra038326.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02310.1	Bra004007.1-P	AT1G69120.1	15604664
AT3G02310.1	Bra004361.1-P	AT1G69120.1	15604664
AT3G02310.1	Bra038326.1-P	AT1G69120.1	15604664
AT3G02310.1	Bra000393.1-P	AT2G45660.1	15805477
AT3G02310.1	Bra004928.1-P	AT2G45660.1	15805477
AT3G02310.1	Bra039324.1-P	AT2G45660.1	15805477
AT3G02310.1	Bra007067.1-P	AT3G54340.1	15604664
AT3G02310.1	Bra014822.1-P	AT3G54340.1	15604664
AT3G02310.1	Bra011509.1-P	AT3G57230.1	15805477
AT3G02310.1	Bra017638.1-P	AT3G57230.1	15805477
AT3G02310.1	Bra012564.1-P	AT4G18960.1	15604664
AT3G02310.1	Bra013364.1-P	AT4G18960.1	15604664
AT3G02310.1	Bra012564.1-P	AT4G18960.1	15805477
AT3G02310.1	Bra013364.1-P	AT4G18960.1	15805477
AT3G02310.1	Bra012564.1-P	AT4G18960.1	9418042
AT3G02310.1	Bra013364.1-P	AT4G18960.1	9418042
AT3G02310.1	Bra010623.1-P	AT4G37940.1	15805477
AT3G02310.1	Bra011797.1-P	AT4G37940.1	15805477
AT3G02310.1	Bra002285.1-P	AT5G20240.1	15604664
AT3G02310.1	Bra006549.1-P	AT5G20240.1	15604664
AT3G02310.1	Bra020093.1-P	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57524	Canola	nucleus	99.2	99.2
CDY43239	Canola	nucleus	96.8	96.8
Bra021470.1-P	Field mustard	nucleus	94.4	93.65
AT3G02310.1	Thale cress	nucleus	91.6	91.6
Bra008674.1-P	Field mustard	nucleus	86.4	85.71
Bra006322.1-P	Field mustard	nucleus	83.6	83.6
KRH18339	Soybean	nucleus	73.2	73.49
KRG93698	Soybean	nucleus	73.2	73.49
KRH45097	Soybean	nucleus	73.2	72.91
VIT_14s0083g01050.t01	Wine grape	nucleus	70.8	72.84
KRH01380	Soybean	nucleus	72.8	71.37
Solyc02g089200.2.1	Tomato	nucleus	64.4	65.45
PGSC0003DMT400003483	Potato	nucleus	64.0	65.04
GSMUA_Achr11P...	Banana	nucleus	58.0	61.7
Bra030032.1-P	Field mustard	nucleus	60.0	59.52
Bra032814.1-P	Field mustard	nucleus	60.0	59.29
Os09t0507200-01	Rice	nucleus	58.8	59.27
Bra010955.1-P	Field mustard	nucleus	57.6	59.02
EER97012	Sorghum	nucleus	57.2	58.85
HORVU5Hr1G076400.1	Barley	nucleus	59.2	58.73
TraesCS5B01G286100.2	Wheat	nucleus	59.2	58.73
TraesCS7B01G158600.1	Wheat	nucleus	57.6	58.54
TraesCS7D01G261600.1	Wheat	nucleus	58.0	58.47
TraesCS5A01G286800.1	Wheat	nucleus	58.8	58.33
TraesCS5D01G294500.1	Wheat	nucleus	58.8	58.33
TraesCS7A01G260600.1	Wheat	nucleus	57.6	58.06
Os08t0531700-01	Rice	nucleus	57.2	57.43
Zm00001d006094_P001	Maize	nucleus	57.6	57.37
Zm00001d021057_P001	Maize	nucleus	56.0	56.68
EES15309	Sorghum	nucleus	54.4	56.43
HORVU7Hr1G054220.3	Barley	nucleus	55.6	54.3
Zm00001d031620_P001	Maize	nucleus	54.8	53.73
Bra025126.1-P	Field mustard	nucleus	52.8	51.36
Bra026543.1-P	Field mustard	nucleus	52.8	49.07
Bra004361.1-P	Field mustard	nucleus	36.0	47.62
Bra025411.1-P	Field mustard	nucleus	32.8	46.59
Bra017376.1-P	Field mustard	nucleus	44.8	46.09
Bra004927.1-P	Field mustard	nucleus	43.6	45.04
Bra000392.1-P	Field mustard	nucleus	44.8	43.58
Bra014454.1-P	Field mustard	nucleus	38.0	41.3
Bra029347.1-P	Field mustard	nucleus	38.0	39.58
Bra011021.1-P	Field mustard	nucleus	40.0	39.37
Bra035952.1-P	Field mustard	nucleus	37.2	38.59
Bra012997.1-P	Field mustard	nucleus	37.2	38.59
Bra038326.1-P	Field mustard	nucleus	39.2	38.28
Bra000696.1-P	Field mustard	nucleus	34.4	37.23
Bra036201.1-P	Field mustard	nucleus	36.4	36.69
Bra037895.1-P	Field mustard	nucleus	33.2	36.09
Bra004716.1-P	Field mustard	nucleus	35.2	36.07
Bra007419.1-P	Field mustard	nucleus	35.2	35.92
Bra004007.1-P	Field mustard	nucleus	38.4	35.42
Bra014552.1-P	Field mustard	nucleus	34.8	35.08
Bra012564.1-P	Field mustard	nucleus	35.2	35.06
Bra013364.1-P	Field mustard	nucleus	35.2	34.92
Bra011797.1-P	Field mustard	nucleus	31.2	34.21
Bra030222.1-P	Field mustard	nucleus	30.4	33.48
Bra039921.1-P	Field mustard	nucleus	30.4	33.48
Bra010623.1-P	Field mustard	nucleus	28.4	33.18
Bra017638.1-P	Field mustard	nucleus	31.2	32.5
Bra003356.1-P	Field mustard	nucleus	33.6	30.77
Bra011509.1-P	Field mustard	nucleus	30.0	25.86
Bra040719.1-P	Field mustard	nucleus	16.8	24.71

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra039170	EnsemblPlants:Bra039170.1	EnsemblPlants:Bra039170.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4FDJ9
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF353	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002547648	:	:	:

Description

AT3G02310 (E=2e-134) SEP2, AGL4 | SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor

Coordinates

chrA05:+:23643978..23646064

Molecular Weight (calculated)

28571.3 Da

IEP (calculated)

8.347

GRAVY (calculated)

-0.676

Length

250 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLDRY QKCSYGSVEV NNKPAKELEN SYREYLKLKG
101: RYENLQLQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LTDLQGKEHM LLEANRALSI KLEDMIGMRS HHVGGAWEGG DQQNVAYGHH
201: QTQPQGLFQS LECDPTLQIG YNHPVCSEQM AVTTQGQTQP GNGYIPGWML

Best Arabidopsis Sequence Match ( AT3G02310.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML

Arabidopsis Description

SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.