Factsheet for Bra007067.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002285.1-P
Bra006549.1-P
Bra020093.1-P
Bra021470.1-P
Bra039170.1-P
Bra039878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	Bra039878.1-P	AT1G30950.1	18287201
AT3G54340.1	Bra021470.1-P	AT3G02310.1	15604664
AT3G54340.1	Bra039170.1-P	AT3G02310.1	15604664
AT3G54340.1	Bra002285.1-P	AT5G20240.1	15604664
AT3G54340.1	Bra006549.1-P	AT5G20240.1	15604664
AT3G54340.1	Bra020093.1-P	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73487	Canola	nucleus	99.57	99.57
Bra014822.1-P	Field mustard	nucleus	94.83	98.21
AT3G54340.1	Thale cress	nucleus	94.83	94.83
KRH61083	Soybean	nucleus	40.95	68.35
GSMUA_Achr9P20940_001	Banana	nucleus	26.29	59.8
Solyc04g081000.2.1	Tomato	nucleus	58.19	59.21
VIT_18s0001g13460.t01	Wine grape	nucleus	57.33	58.85
PGSC0003DMT400009510	Potato	nucleus	57.33	58.33
KRH66520	Soybean	nucleus	33.19	58.33
KRH07712	Soybean	nucleus	33.19	58.33
KRH25650	Soybean	nucleus	33.19	58.33
KRH51760	Soybean	nucleus	53.45	54.63
TraesCS7B01G286600.2	Wheat	nucleus	48.71	49.34
TraesCS7D01G380300.1	Wheat	nucleus	48.28	49.34
EER90370	Sorghum	nucleus	47.84	49.12
Zm00001d036425_P002	Maize	nucleus	47.84	48.9
GSMUA_Achr9P20950_001	Banana	nucleus	47.41	48.89
Os06t0712700-01	Rice	nucleus	46.12	47.77
TraesCS7A01G383800.1	Wheat	nucleus	48.71	47.68
TraesCS6B01G159400.1	Wheat	nucleus	41.81	41.99
TraesCS6D01G120900.1	Wheat	nucleus	42.24	41.0
TraesCS6A01G131100.1	Wheat	nucleus	40.95	39.75
Bra002285.1-P	Field mustard	nucleus	25.0	39.73
HORVU7Hr1G091210.4	Barley	nucleus, plastid	37.93	36.97
Bra006549.1-P	Field mustard	nucleus	27.16	30.29
Bra020093.1-P	Field mustard	nucleus	25.43	29.06
Bra013028.1-P	Field mustard	nucleus	29.31	28.33
Bra029365.1-P	Field mustard	nucleus	28.45	27.27
Bra026507.1-P	Field mustard	nucleus	28.45	21.09

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra007067	EnsemblPlants:Bra007067.1	EnsemblPlants:Bra007067.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CS75
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A731E	SEG:seg	:	:

Description

AT3G54340 (E=1e-113) AP3, ATAP3 | AP3 (APETALA 3); DNA binding / transcription factor

Coordinates

chrA09:-:27131384..27133316

Molecular Weight (calculated)

27284.4 Da

IEP (calculated)

8.954

GRAVY (calculated)

-0.854

Length

232 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEFISP NTTTKEIIDL YQTVSDVDVW SAHYERMQET KRKLLETNRK
101: LRTQIKQRLG ECLDELDIQE LRSLEEEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRYHQNHHH HYPNHALHAP SASDIITFHL LE

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.