CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93698
KRH01380
KRH16433
KRH18034
KRH18339
KRH42420
KRH45097
KRH53304
KRH58532
KRH64611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	KRH42420	AT1G30950.1	18287201
AT3G54340.1	KRH58532	AT1G30950.1	18287201
AT3G54340.1	KRG93698	AT3G02310.1	15604664
AT3G54340.1	KRH01380	AT3G02310.1	15604664
AT3G54340.1	KRH18339	AT3G02310.1	15604664
AT3G54340.1	KRH45097	AT3G02310.1	15604664
AT3G54340.1	KRH16433	AT5G20240.1	15604664
AT3G54340.1	KRH18034	AT5G20240.1	15604664
AT3G54340.1	KRH53304	AT5G20240.1	15604664
AT3G54340.1	KRH64611	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61083	Soybean	nucleus	59.47	97.12
KRH66520	Soybean	nucleus	50.66	87.12
KRH25650	Soybean	nucleus	50.66	87.12
KRH07712	Soybean	nucleus	50.22	86.36
VIT_18s0001g13460.t01	Wine grape	nucleus	70.04	70.35
PGSC0003DMT400009510	Potato	nucleus	66.08	65.79
Solyc04g081000.2.1	Tomato	nucleus	65.2	64.91
GSMUA_Achr9P20940_001	Banana	nucleus	27.75	61.76
CDY69833	Canola	nucleus	46.7	59.89
CDX76152	Canola	nucleus	53.74	54.46
Bra014822.1-P	Field mustard	nucleus	53.3	54.02
CDY13200	Canola	nucleus	53.3	54.02
GSMUA_Achr9P20950_001	Banana	nucleus	53.3	53.78
AT3G54340.1	Thale cress	nucleus	54.63	53.45
Bra007067.1-P	Field mustard	nucleus	54.63	53.45
CDX73487	Canola	nucleus	54.19	53.02
Os06t0712700-01	Rice	nucleus	51.98	52.68
EER90370	Sorghum	nucleus	52.42	52.65
Zm00001d036425_P002	Maize	nucleus	52.42	52.42
TraesCS7B01G286600.2	Wheat	nucleus	51.98	51.53
TraesCS7D01G380300.1	Wheat	nucleus	51.1	51.1
TraesCS7A01G383800.1	Wheat	nucleus	51.98	49.79
KRH28746	Soybean	nucleus	48.9	47.44
KRH76708	Soybean	nucleus	50.66	47.33
TraesCS6B01G159400.1	Wheat	nucleus	45.81	45.02
TraesCS6D01G120900.1	Wheat	nucleus	46.7	44.35
TraesCS6A01G131100.1	Wheat	nucleus	44.05	41.84
HORVU7Hr1G091210.4	Barley	nucleus, plastid	43.17	41.18
KRH18034	Soybean	nucleus	36.56	39.9
KRH16433	Soybean	nucleus	36.12	39.42
KRH53304	Soybean	nucleus	30.4	38.12
KRH64611	Soybean	nucleus	30.4	38.12
KRH40895	Soybean	nucleus	35.24	32.79
KRG89112	Soybean	nucleus	34.8	32.24

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:547720	EMBL:ACUP02003388	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G027200
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1K7M4	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
EnsemblPlants:KRH51760	ProteinID:KRH51760	ProteinID:KRH51760.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF219
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00023C3840
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:2104472..2108449

Molecular Weight (calculated)

26199.4 Da

IEP (calculated)

9.796

GRAVY (calculated)

-0.713

Length

227 amino acids

Sequence
(BLAST)

001: MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEYISP STSTKQFFDQ YQMTLGVDLW NSHYENMQEN LKKLKDVNRN
101: LRKEIRQRMG DCLNDLGMED LKLLEEEMDK AAKVVRERKY KVITNQIDTQ RKKFNNEKEV HNRLLRDLDA RAEDPRFALI DNGGEYESVI GFSNLGPRMF
201: ALSLQPSHPS AQSGAAGSDL TTYPLLF

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.