CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89112	Soybean	nucleus	93.85	93.47
VIT_10s0042g00820.t01	Wine grape	nucleus	54.1	55.93
CDY45758	Canola	nucleus	48.77	49.17
CDY02217	Canola	nucleus	48.36	49.17
Bra013028.1-P	Field mustard	nucleus	48.36	49.17
CDY40800	Canola	nucleus	48.36	48.76
Bra029365.1-P	Field mustard	nucleus	47.54	47.93
CDY69354	Canola	nucleus	47.54	47.93
Solyc11g005120.1.1	Tomato	nucleus	45.08	46.22
CDX87180	Canola	nucleus	46.31	46.12
KRH61083	Soybean	nucleus	25.82	45.32
AT5G23260.4	Thale cress	nucleus	47.95	43.66
GSMUA_Achr3P23580_001	Banana	nucleus	42.21	42.74
GSMUA_Achr2P02660_001	Banana	nucleus	40.98	41.67
KRH25650	Soybean	nucleus	22.13	40.91
KRH66520	Soybean	nucleus	22.13	40.91
KRH07712	Soybean	nucleus	22.13	40.91
KRH53304	Soybean	nucleus	30.33	40.88
KRH16433	Soybean	nucleus	33.61	39.42
TraesCS6D01G147400.1	Wheat	nucleus	40.57	39.29
TraesCS6A01G158100.1	Wheat	nucleus	40.57	39.29
KRH64611	Soybean	nucleus	29.1	39.23
TraesCS6B01G186700.1	Wheat	nucleus	40.57	39.13
Zm00001d018587_P001	Maize	nucleus	26.64	38.46
Os02t0170300-01	Rice	nucleus	40.98	38.46
HORVU6Hr1G032220.7	Barley	nucleus	40.98	38.46
Zm00001d015381_P001	Maize	nucleus	40.98	38.46
Os04t0614100-00	Rice	nucleus	27.87	38.2
EES06346	Sorghum	nucleus	40.16	37.98
KRH18034	Soybean	nucleus	31.97	37.5
CDY16841	Canola	nucleus	46.72	35.85
KRH51760	Soybean	nucleus	32.79	35.24
Bra026507.1-P	Field mustard	nucleus	45.08	35.14
Os06t0667200-01	Rice	nucleus	29.92	33.03
TraesCS2B01G440900.1	Wheat	nucleus	34.02	32.81
TraesCS3D01G102700.1	Wheat	nucleus	30.74	32.75
OQU82318	Sorghum	nucleus	34.43	32.68
Zm00001d018767_P001	Maize	nucleus	34.02	32.55
Zm00001d003168_P001	Maize	nucleus	31.56	31.95
KRH28746	Soybean	nucleus	29.92	31.2
TraesCS3A01G090900.1	Wheat	nucleus	28.69	30.84
TraesCS3A01G090300.1	Wheat	nucleus	28.28	30.67
KXG20558	Sorghum	nucleus	29.92	30.54
TraesCS1D01G441200.1	Wheat	nucleus	23.77	30.53
TraesCS3D01G090300.1	Wheat	nucleus	27.05	30.14
TraesCS2D01G418800.2	Wheat	nucleus	33.2	29.89
TraesCS2A01G422400.2	Wheat	nucleus	33.2	29.78
TraesCS7A01G475000.1	Wheat	nucleus	27.46	29.78
KRH76708	Soybean	nucleus	29.51	29.63
Zm00001d041587_P001	Maize	nucleus	16.39	29.63
TraesCS3B01G105700.2	Wheat	nucleus	27.46	29.52
HORVU2Hr1G098930.3	Barley	nucleus	33.2	29.35
Zm00001d033701_P001	Maize	nucleus	26.23	26.45
Zm00001d020114_P001	Maize	nucleus	23.77	25.78
TraesCS7B01G377700.1	Wheat	nucleus	22.95	24.78
HORVU7Hr1G108280.4	Barley	nucleus, plastid	27.05	24.72
HORVU7Hr1G108410.1	Barley	nucleus	21.31	23.85
Zm00001d031591_P001	Maize	nucleus	27.87	23.45
Zm00001d047742_P001	Maize	nucleus	28.69	20.53

Protein Annotations

EntrezGene:102667157	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02006068	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G283800
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7LGM2	EnsemblPlants:KRH40895	ProteinID:KRH40895
ProteinID:KRH40895.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI000295BD23	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:49914155..49924103

Molecular Weight (calculated)

28841.5 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.802

Length

244 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENKTTRQVT FSKRRCGLLK KTKELSVLCD AKIGIIIFSS TGKMREWCTE PFRMEQIIEQ YQISKGTCIA ERGRDHPREE FVHNMAMLRQ
101: KTIRLELEIQ RYLGEDTRGL QYEDLTKLEQ ELENSVARVR NRHNELLQQQ MENLRRKERI LEEENNNLSN WEHQAVLEFQ KAADTVEASK PMHVMDHFSF
201: FEEQPAGSIL QLASPMLPHF YPYLQLAQPN IQDSVRDQSY NNEQ

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.