Factsheet for TraesCS6B01G186700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147400.1	Wheat	nucleus	98.81	99.21
TraesCS6A01G158100.1	Wheat	nucleus	98.81	99.21
HORVU6Hr1G032220.7	Barley	nucleus	97.23	94.62
Os02t0170300-01	Rice	nucleus	82.61	80.38
Zm00001d015381_P001	Maize	nucleus	77.87	75.77
EES06346	Sorghum	nucleus	75.49	74.03
GSMUA_Achr3P23580_001	Banana	nucleus	57.71	60.58
GSMUA_Achr2P02660_001	Banana	nucleus	56.92	60.0
VIT_10s0042g00820.t01	Wine grape	nucleus	45.06	48.31
VIT_01s0011g01560.t01	Wine grape	nucleus	41.5	46.88
TraesCS2B01G440900.1	Wheat	nucleus	44.66	44.66
CDY02217	Canola	nucleus	39.13	41.25
Bra013028.1-P	Field mustard	nucleus	39.13	41.25
CDY45758	Canola	nucleus	39.13	40.91
KRH40895	Soybean	nucleus	39.13	40.57
KRG89112	Soybean	nucleus	39.13	40.41
VIT_02s0025g02350.t01	Wine grape	nucleus	32.81	40.29
CDX87180	Canola	nucleus	37.94	39.18
TraesCS1B01G275000.1	Wheat	nucleus	32.02	38.94
TraesCS7B01G377700.1	Wheat	nucleus	34.39	38.5
TraesCS3B01G105700.2	Wheat	nucleus	33.99	37.89
Solyc11g005120.1.1	Tomato	nucleus	35.18	37.4
Bra029365.1-P	Field mustard	nucleus	35.18	36.78
CDY69354	Canola	nucleus	35.18	36.78
TraesCS3B01G440200.3	Wheat	nucleus	30.83	36.45
CDY40800	Canola	nucleus	34.78	36.36
AT5G23260.4	Thale cress	nucleus	35.97	33.96
TraesCS7B01G286600.2	Wheat	nucleus	30.04	33.19
TraesCS3B01G318300.1	Wheat	cytosol	24.9	32.14
CDY16841	Canola	nucleus	39.13	31.13
Bra026507.1-P	Field mustard	nucleus	38.34	30.99
TraesCS6B01G159400.1	Wheat	nucleus	24.9	27.27

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009791
GO:GO:0009987	GO:GO:0019252	GO:GO:0043068	GO:GO:0045944	GO:GO:0046983	GO:GO:0048316
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS6B01G186700
EnsemblPlants:TraesCS6B01G186700.1	TIGR:cd00265	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:212968202..212970661

Molecular Weight (calculated)

28573.0 Da

IEP (calculated)

7.255

GRAVY (calculated)

-0.529

Length

253 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP ASSLRDLIEQ YQNATNSQFE EINHDQQIFV EMTRMRNEME
101: KLDGAIRRYT GDDLSSLSLA DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKEHILED QNSFLCRMIS ENQHGSDRKM AVMPPVLSML TPAFPATPYY
201: TGEESSSTAL QLTSPQLQLH AAEAAGFRLQ PTQPNLQDPA CSSLHAGHGL HLW

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.