Factsheet for TraesCS3B01G318300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

cytosol: 17211514

gfp PMID: 17211514 doi

G Tardif, NA Kane, H Adam, L Labrie, G Major, P Gulick, F Sarhan, JF Laliberté

Institut Armand-Frappier, Institut national de la recherche scientifique, 531 boulevard des Prairies, Laval, Québec, Canada, H7V 1B7.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G284200.1	Wheat	nucleus	99.49	99.49
TraesCS3A01G284400.1	Wheat	nucleus	97.45	89.67
Os01t0726400-01	Rice	nucleus	87.24	87.24
KXG33296	Sorghum	nucleus	82.14	81.73
Zm00001d011748_P001	Maize	nucleus	78.57	78.17
HORVU3Hr1G068900.3	Barley	nucleus, plastid	97.45	65.19
GSMUA_Achr9P05780_001	Banana	nucleus	66.33	60.75
Zm00001d043589_P002	Maize	plastid	78.06	55.64
TraesCS3B01G105700.2	Wheat	nucleus	35.2	30.4
TraesCS1B01G275000.1	Wheat	nucleus	31.63	29.81
TraesCS7B01G286600.2	Wheat	nucleus	33.16	28.38
TraesCS6B01G159400.1	Wheat	nucleus	32.65	27.71
TraesCS3B01G440200.3	Wheat	nucleus	28.57	26.17
TraesCS2B01G440900.1	Wheat	nucleus	32.14	24.9
TraesCS6B01G186700.1	Wheat	nucleus	32.14	24.9
TraesCS7B01G377700.1	Wheat	nucleus	27.04	23.45

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF214	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
EnsemblPlantsGene:TraesCS3B01G318300	EnsemblPlants:TraesCS3B01G318300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:513254148..513256118

Molecular Weight (calculated)

22317.9 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.545

Length

196 amino acids

Sequence
(BLAST)

001: MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP TVPSVKEFVE RYEAATHTKV WSDIRQERRA ELEKVAKMCD
101: LLEKELRFMT VDDGEQYSVP SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKVVEG GSTSLNNGLD LKLGFN

Best Arabidopsis Sequence Match ( AT5G20240.2 )
(BLAST)

001: MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS
101: LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQV CIHFYIHSYT

Arabidopsis Description

PIFloral homeotic protein PISTILLATA [Source:UniProtKB/Swiss-Prot;Acc:P48007]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.