Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011748_P001 | Maize | nucleus | 92.39 | 92.39 |
| TraesCS3D01G284200.1 | Wheat | nucleus | 82.23 | 82.65 |
| Os01t0726400-01 | Rice | nucleus | 81.73 | 82.14 |
| TraesCS3B01G318300.1 | Wheat | cytosol | 81.73 | 82.14 |
| TraesCS3A01G284400.1 | Wheat | nucleus | 80.2 | 74.18 |
| Zm00001d043589_P002 | Maize | plastid | 88.32 | 63.27 |
| GSMUA_Achr9P05780_001 | Banana | nucleus | 63.96 | 58.88 |
| HORVU3Hr1G068900.3 | Barley | nucleus, plastid | 81.73 | 54.95 |
| KXG20558 | Sorghum | nucleus | 35.03 | 28.87 |
| EER90370 | Sorghum | nucleus | 32.49 | 28.32 |
| EES01864 | Sorghum | nucleus | 29.44 | 27.75 |
| EES18254 | Sorghum | nucleus | 27.92 | 25.94 |
| EES06346 | Sorghum | nucleus | 33.5 | 25.58 |
| OQU82318 | Sorghum | nucleus | 29.95 | 22.96 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1B6Q5V7 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | EnsemblPlants:KXG33296 | ProteinID:KXG33296 | ProteinID:KXG33296.1 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF214 |
| SMART:SM00432 | EnsemblPlantsGene:SORBI_3003G282400 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00081AD533 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:61699518..61702442
Molecular Weight (calculated)
22574.8 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.716
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP TVPSVKDMVE RYEAATHTKA WTDIRQERRA ELEKVEQMCD
101: LMEKELRFMT VDDGEQYTVP SLELLEHNLE AAVHKVRSEK DRKIGGEISY LENIIRGRHE ERYGLCDQLA HSQASNNNGE GGSAPPSSGL ELKLGFN
101: LMEKELRFMT VDDGEQYTVP SLELLEHNLE AAVHKVRSEK DRKIGGEISY LENIIRGRHE ERYGLCDQLA HSQASNNNGE GGSAPPSSGL ELKLGFN
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.