Factsheet for Zm00001d011748_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33296	Sorghum	nucleus	92.39	92.39
Os01t0726400-01	Rice	nucleus	80.71	81.12
TraesCS3D01G284200.1	Wheat	nucleus	78.68	79.08
TraesCS3B01G318300.1	Wheat	cytosol	78.17	78.57
TraesCS3A01G284400.1	Wheat	nucleus	77.16	71.36
Zm00001d043589_P002	Maize	plastid	88.32	63.27
GSMUA_Achr9P05780_001	Banana	nucleus	61.42	56.54
HORVU3Hr1G068900.3	Barley	nucleus, plastid	78.68	52.9
Zm00001d018587_P001	Maize	nucleus	26.4	30.77
Zm00001d036425_P002	Maize	nucleus	31.47	27.31
Zm00001d010232_P001	Maize	nucleus	28.93	26.89
Zm00001d015381_P001	Maize	nucleus	33.5	25.38
Zm00001d042618_P001	Maize	nucleus	28.93	25.33
Zm00001d003168_P001	Maize	nucleus	28.93	23.65
Zm00001d018767_P001	Maize	nucleus	29.44	22.75
Zm00001d010233_P004	Maize	nucleus	28.93	22.27
Zm00001d041587_P001	Maize	nucleus	14.21	20.74
Zm00001d033701_P001	Maize	nucleus	25.38	20.66
Zm00001d020114_P001	Maize	nucleus	22.84	20.0
Zm00001d031591_P001	Maize	nucleus	28.43	19.31
Zm00001d047742_P001	Maize	nucleus	29.44	17.01

Protein Annotations

EntrezGene:100216936	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AQK97927.1	UniProt:B6UCT1	EMBL:BT068004
ncoils:Coil	EMBL:EU975046	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EMBL:KJ726919
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF214	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000182F89E	EnsemblPlantsGene:Zm00001d011748	EnsemblPlants:Zm00001d011748_P001	EnsemblPlants:Zm00001d011748_T001	SEG:seg

Description

MADS-transcription factor 43Floral homeotic protein APETALA 3

Coordinates

chr8:-:160706837..160710739

Molecular Weight (calculated)

22509.9 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.712

Length

197 amino acids

Sequence
(BLAST)

001: MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP TVPSVKDLVE RYEATTHTKV WTDIRQERRA ELEKAEQMCE
101: LMEKELRVMT VDDGEQYTVP SLELLEHSLE AAVRKVRSEK DRKIGGEINY LENIIRGRHE ERYGLCNKLA HSQASNNEGG GGSTPPSSGL ELKLGLN

Best Arabidopsis Sequence Match ( AT4G09960.2 )
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG

Arabidopsis Description

STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.