Factsheet for Zm00001d047742_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018587_P001	Maize	nucleus	40.76	82.25
Os04t0614100-00	Rice	nucleus	37.54	71.91
Zm00001d003168_P001	Maize	nucleus	45.16	63.9
Zm00001d031591_P001	Maize	nucleus	53.08	62.41
Zm00001d018767_P001	Maize	nucleus	46.04	61.57
OQU82318	Sorghum	nucleus	46.04	61.09
Zm00001d033701_P001	Maize	nucleus	42.52	59.92
TraesCS2B01G440900.1	Wheat	nucleus	40.18	54.15
TraesCS2D01G418800.2	Wheat	nucleus	39.59	49.82
TraesCS2A01G422400.2	Wheat	nucleus	39.59	49.63
HORVU2Hr1G098930.3	Barley	nucleus	39.0	48.19
Zm00001d020114_P001	Maize	nucleus	26.1	39.56
GSMUA_Achr3P23580_001	Banana	nucleus	27.57	39.0
GSMUA_Achr2P02660_001	Banana	nucleus	27.27	38.75
VIT_10s0042g00820.t01	Wine grape	nucleus	24.63	35.59
VIT_01s0011g01560.t01	Wine grape	nucleus	22.87	34.82
Zm00001d015381_P001	Maize	nucleus	26.39	34.62
VIT_02s0025g02350.t01	Wine grape	nucleus	20.53	33.98
Bra013028.1-P	Field mustard	nucleus	22.58	32.08
CDY02217	Canola	nucleus	22.58	32.08
Zm00001d041587_P001	Maize	nucleus	12.61	31.85
CDY45758	Canola	nucleus	22.58	31.82
CDY69354	Canola	nucleus	21.7	30.58
CDY40800	Canola	nucleus	21.7	30.58
Bra029365.1-P	Field mustard	nucleus	21.7	30.58
CDX87180	Canola	nucleus	21.7	30.2
Zm00001d036425_P002	Maize	nucleus	19.94	29.96
Zm00001d011748_P001	Maize	nucleus	17.01	29.44
Solyc11g005120.1.1	Tomato	nucleus	20.53	29.41
AT5G23260.4	Thale cress	nucleus	22.87	29.1
KRH40895	Soybean	nucleus	20.53	28.69
Zm00001d010232_P001	Maize	nucleus	17.6	28.3
KRG89112	Soybean	nucleus	20.23	28.16
Zm00001d042618_P001	Maize	nucleus	18.18	27.56
CDY16841	Canola	nucleus	21.99	23.58
Bra026507.1-P	Field mustard	nucleus	21.41	23.32
Zm00001d010233_P004	Maize	nucleus	17.01	22.66
Zm00001d043589_P002	Maize	plastid	17.6	21.82

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AQL07445.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7VJ68	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF210
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000220D15E
EnsemblPlantsGene:Zm00001d047742	EnsemblPlants:Zm00001d047742_P001	EnsemblPlants:Zm00001d047742_T001	:	:	:

Description

MADS-transcription factor 28Putative MADS-box transcription factor family protein

Coordinates

chr9:+:140438118..140443638

Molecular Weight (calculated)

39201.2 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.275

Length

341 amino acids

Sequence
(BLAST)

001: MGHGKVELKK IENPTNRQVT FSKRRMGLFK KANEVAILCD AQIGVIIFSG SGRMYEYSSP PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN
101: RLRMIMAQYM AEDLASFSVQ DLSNLEQQIE FSLYKVRLRK IKERISLLPL WPRVRRGERS RSNINPQRHG QSCSRNAHSC RSCPVDEQED LMLDTCWCHC
201: HLAPIRCYGV ASLHLAFSDD EDPAAAVATD EDLDGEDLFN DNYLEELPKK MSLDALMLEP VNKDFWGYFG FNVKLSGFEA TSIYDLLGHF ISICHCLKLG
301: HALERFAHVG LAIITLLDIY CFGVMVTCSD NVQFLSQVRS E

Best Arabidopsis Sequence Match ( AT3G57230.2 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.