CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45758	Canola	nucleus	79.59	80.58
CDY02217	Canola	nucleus	77.55	79.17
CDY40800	Canola	nucleus	76.33	77.27
CDY69354	Canola	nucleus	75.1	76.03
CDY16841	Canola	nucleus	95.51	73.58
AT5G23260.4	Thale cress	nucleus	77.14	70.52
VIT_10s0042g00820.t01	Wine grape	nucleus	49.8	51.69
VIT_01s0011g01560.t01	Wine grape	nucleus	43.67	47.77
Solyc11g005120.1.1	Tomato	nucleus	45.71	47.06
KRH40895	Soybean	nucleus	46.12	46.31
GSMUA_Achr3P23580_001	Banana	nucleus	45.31	46.06
KRG89112	Soybean	nucleus	45.31	45.31
GSMUA_Achr2P02660_001	Banana	nucleus	43.27	44.17
VIT_02s0025g02350.t01	Wine grape	nucleus	35.92	42.72
CDY35823	Canola	nucleus	26.12	41.56
CDX92479	Canola	nucleus	25.71	40.91
Os04t0614100-00	Rice	nucleus	29.39	40.45
Zm00001d018587_P001	Maize	nucleus	27.35	39.65
CDY45099	Canola	nucleus	31.84	38.42
CDX88846	Canola	nucleus	31.84	38.42
CDY60377	Canola	nucleus	31.84	38.42
TraesCS6D01G147400.1	Wheat	nucleus	39.18	38.1
TraesCS6A01G158100.1	Wheat	nucleus	39.18	38.1
Zm00001d015381_P001	Maize	nucleus	40.41	38.08
TraesCS6B01G186700.1	Wheat	nucleus	39.18	37.94
EES06346	Sorghum	nucleus	39.59	37.6
HORVU6Hr1G032220.7	Barley	nucleus	39.59	37.31
Os02t0170300-01	Rice	nucleus	39.18	36.92
TraesCS3D01G090300.1	Wheat	nucleus	31.84	35.62
TraesCS3D01G102700.1	Wheat	nucleus	33.06	35.37
TraesCS2B01G440900.1	Wheat	nucleus	36.33	35.18
OQU82318	Sorghum	nucleus	36.73	35.02
TraesCS1D01G441200.1	Wheat	nucleus	26.94	34.74
CDY69833	Canola	nucleus	24.9	34.46
TraesCS3A01G090900.1	Wheat	nucleus	31.84	34.36
TraesCS3A01G090300.1	Wheat	nucleus	31.43	34.22
TraesCS7A01G475000.1	Wheat	nucleus	31.43	34.22
Os06t0667200-01	Rice	nucleus	30.61	33.94
TraesCS3B01G105700.2	Wheat	nucleus	31.43	33.92
Zm00001d018767_P001	Maize	nucleus	35.1	33.73
KXG20558	Sorghum	nucleus	32.65	33.47
Zm00001d003168_P001	Maize	nucleus	32.65	33.2
HORVU2Hr1G098930.3	Barley	nucleus	37.14	32.97
Zm00001d041587_P001	Maize	nucleus	17.96	32.59
TraesCS2D01G418800.2	Wheat	nucleus	35.92	32.47
TraesCS2A01G422400.2	Wheat	nucleus	35.92	32.35
TraesCS7B01G377700.1	Wheat	nucleus	28.57	30.97
HORVU7Hr1G108410.1	Barley	nucleus	26.94	30.28
HORVU7Hr1G108280.4	Barley	nucleus, plastid	31.84	29.21
Zm00001d033701_P001	Maize	nucleus	28.57	28.93
CDX73487	Canola	nucleus	26.94	28.45
CDX76152	Canola	nucleus	25.71	28.12
Zm00001d020114_P001	Maize	nucleus	25.71	28.0
CDY13200	Canola	nucleus	25.31	27.68
Zm00001d031591_P001	Maize	nucleus	31.02	26.21
Zm00001d047742_P001	Maize	nucleus	30.2	21.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078DD91	EnsemblPlants:CDX87180	ProteinID:CDX87180	ProteinID:CDX87180.1
ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
GO:GO:0048316	EnsemblPlantsGene:GSBRNA2T00146106001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI0004EEFFC8	SEG:seg	:	:

Description

BnaC09g04950D

Coordinates

chrLK031849:-:966226..968625

Molecular Weight (calculated)

29042.6 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.935

Length

245 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENKTSRQVT FSKRRNGLIK KTRELSILCD AHIGLIVFSA TGKLTQYCSE HSNMPQLIDR YLTKEGLQLP DLNDDRDDLR HEIEILRRET
101: CKLELRLRPY HGHDLASIPP HELDGLEHQL EHSVHKVRER KKELLQQQLG NLSRKRRMLE DDNNNMYRWL HDEHRTGIEF QQAEIETKPM EYQQFLEHVQ
201: YYNDHHQQQS SVLQLPTLPS EIDLSYHLQL AQPNFQNDPT ITKVD

Best Arabidopsis Sequence Match ( AT5G23260.1 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKQQL ENLSRKRRML EEDNNNMYRW LHEHRAAMEF QQAGIDTKPG
201: EYQQFIEQLQ CYKPGEYQQF LEQQQQQPNS VLQLATLPSE IDPTYNLQLA QPNLQNDPTA QND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.