Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06346 | Sorghum | nucleus | 93.85 | 94.57 |
| TraesCS6D01G147400.1 | Wheat | nucleus | 75.77 | 78.17 |
| TraesCS6A01G158100.1 | Wheat | nucleus | 75.77 | 78.17 |
| TraesCS6B01G186700.1 | Wheat | nucleus | 75.77 | 77.87 |
| Os02t0170300-01 | Rice | nucleus | 77.31 | 77.31 |
| HORVU6Hr1G032220.7 | Barley | nucleus | 76.54 | 76.54 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 58.46 | 63.07 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 56.54 | 61.25 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 46.54 | 51.27 |
| Zm00001d018587_P001 | Maize | nucleus | 31.92 | 49.11 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 41.15 | 47.77 |
| Zm00001d018767_P001 | Maize | nucleus | 42.31 | 43.14 |
| CDY45758 | Canola | nucleus | 40.0 | 42.98 |
| Bra013028.1-P | Field mustard | nucleus | 39.62 | 42.92 |
| CDY02217 | Canola | nucleus | 39.62 | 42.92 |
| Zm00001d003168_P001 | Maize | nucleus | 39.62 | 42.74 |
| Zm00001d010232_P001 | Maize | nucleus | 34.23 | 41.98 |
| KRH40895 | Soybean | nucleus | 38.46 | 40.98 |
| KRG89112 | Soybean | nucleus | 38.46 | 40.82 |
| CDX87180 | Canola | nucleus | 38.08 | 40.41 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 31.92 | 40.29 |
| Zm00001d041587_P001 | Maize | nucleus | 20.77 | 40.0 |
| Solyc11g005120.1.1 | Tomato | nucleus | 36.54 | 39.92 |
| Zm00001d042618_P001 | Maize | nucleus | 33.85 | 39.11 |
| CDY69354 | Canola | nucleus | 35.77 | 38.43 |
| CDY40800 | Canola | nucleus | 35.77 | 38.43 |
| Bra029365.1-P | Field mustard | nucleus | 35.77 | 38.43 |
| AT5G23260.4 | Thale cress | nucleus | 37.69 | 36.57 |
| Zm00001d036425_P002 | Maize | nucleus | 31.92 | 36.56 |
| Zm00001d010233_P004 | Maize | nucleus | 33.46 | 33.98 |
| Zm00001d011748_P001 | Maize | nucleus | 25.38 | 33.5 |
| Zm00001d020114_P001 | Maize | nucleus | 28.85 | 33.33 |
| Zm00001d033701_P001 | Maize | nucleus | 30.38 | 32.64 |
| CDY16841 | Canola | nucleus | 39.23 | 32.08 |
| Bra026507.1-P | Field mustard | nucleus | 38.46 | 31.95 |
| Zm00001d031591_P001 | Maize | nucleus | 32.69 | 29.31 |
| Zm00001d047742_P001 | Maize | nucleus | 34.62 | 26.39 |
| Zm00001d043589_P002 | Maize | plastid | 27.31 | 25.82 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6H1J3 | ProteinID:AQK68749.1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005975 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008219 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0019252 | GO:GO:0043068 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048316 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF259 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0008444AC4 | EnsemblPlantsGene:Zm00001d015381 | EnsemblPlants:Zm00001d015381_P001 | EnsemblPlants:Zm00001d015381_T001 |
| SEG:seg | : | : | : | : | : |
Description
zea mays MADS17 zea mays MADS17
Coordinates
chr5:+:87397071..87399754
Molecular Weight (calculated)
29188.8 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.530
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP ACSLRELIEQ YQHATNSHFE EINHDQQILL EMTRMKNEME
101: KLETGIRRYT GDDLSSLTLD DVSDLEQQLE YSVSKVRARK HQLLNQQLDN LRRKEQILED QNTFLYRMIN ENQQAALTGE VKLGEMAPLA MLQPPPAFAH
201: SATAYYGGES SSSGTALQLM SAAPQLHADD LGFRLQPTQP NLQDPAAPCG GLHGHGLQLW
101: KLETGIRRYT GDDLSSLTLD DVSDLEQQLE YSVSKVRARK HQLLNQQLDN LRRKEQILED QNTFLYRMIN ENQQAALTGE VKLGEMAPLA MLQPPPAFAH
201: SATAYYGGES SSSGTALQLM SAAPQLHADD LGFRLQPTQP NLQDPAAPCG GLHGHGLQLW
001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.