Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020114_P001 | Maize | nucleus | 80.0 | 48.0 |
| Zm00001d003168_P001 | Maize | nucleus | 79.26 | 44.4 |
| Zm00001d018767_P001 | Maize | nucleus | 79.26 | 41.96 |
| OQU82318 | Sorghum | nucleus | 74.81 | 39.3 |
| TraesCS2B01G440900.1 | Wheat | nucleus | 48.15 | 25.69 |
| TraesCS2D01G418800.2 | Wheat | nucleus | 48.15 | 23.99 |
| TraesCS2A01G422400.2 | Wheat | nucleus | 48.15 | 23.9 |
| Zm00001d018587_P001 | Maize | nucleus | 29.63 | 23.67 |
| HORVU2Hr1G098930.3 | Barley | nucleus | 48.15 | 23.55 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 39.26 | 21.99 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 37.78 | 21.25 |
| Zm00001d015381_P001 | Maize | nucleus | 40.0 | 20.77 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 32.59 | 19.64 |
| Zm00001d010232_P001 | Maize | nucleus | 29.63 | 18.87 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 32.59 | 18.64 |
| Os04t0614100-00 | Rice | nucleus | 23.7 | 17.98 |
| CDX87180 | Canola | nucleus | 32.59 | 17.96 |
| Zm00001d033701_P001 | Maize | nucleus | 31.11 | 17.36 |
| CDY69354 | Canola | nucleus | 30.37 | 16.94 |
| CDY40800 | Canola | nucleus | 30.37 | 16.94 |
| Bra029365.1-P | Field mustard | nucleus | 30.37 | 16.94 |
| Bra013028.1-P | Field mustard | nucleus | 29.63 | 16.67 |
| CDY02217 | Canola | nucleus | 29.63 | 16.67 |
| CDY45758 | Canola | nucleus | 29.63 | 16.53 |
| Zm00001d042618_P001 | Maize | nucleus | 27.41 | 16.44 |
| KRH40895 | Soybean | nucleus | 29.63 | 16.39 |
| KRG89112 | Soybean | nucleus | 29.63 | 16.33 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 24.44 | 16.02 |
| AT5G23260.4 | Thale cress | nucleus | 31.11 | 15.67 |
| Zm00001d010233_P004 | Maize | nucleus | 28.89 | 15.23 |
| Solyc11g005120.1.1 | Tomato | nucleus | 26.67 | 15.13 |
| Zm00001d036425_P002 | Maize | nucleus | 24.44 | 14.54 |
| Zm00001d031591_P001 | Maize | nucleus | 31.11 | 14.48 |
| Zm00001d011748_P001 | Maize | nucleus | 20.74 | 14.21 |
| Bra026507.1-P | Field mustard | nucleus | 31.85 | 13.74 |
| CDY16841 | Canola | nucleus | 31.85 | 13.52 |
| Zm00001d047742_P001 | Maize | nucleus | 31.85 | 12.61 |
| Zm00001d043589_P002 | Maize | plastid | 21.48 | 10.55 |
Protein Annotations
| EntrezGene:103652179 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6MX11 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | ProteinID:ONM33293.1 |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF210 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00022081D2 | EnsemblPlantsGene:Zm00001d041587 | EnsemblPlants:Zm00001d041587_P001 |
| EnsemblPlants:Zm00001d041587_T001 | SEG:seg | : | : | : | : |
Description
MADS-transcription factor 55
Coordinates
chr3:-:128474269..128474787
Molecular Weight (calculated)
15087.2 Da
IEP (calculated)
10.945
GRAVY (calculated)
-0.654
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVEPKK IENPTNRQVT FSKRRMGLFK QAIRRRCTCQ PEQGGYLCLM NLAAAIASGQ HQQAGEMVGI NPRLFLWWDV GASGSGSQSQ QLLHGRDAAE
101: SSMTTLGLSP QMHRYRLQPR QPNLRQDADV HGGLW
101: SSMTTLGLSP QMHRYRLQPR QPNLRQDADV HGGLW
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.