CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029365.1-P	Field mustard	nucleus	96.69	96.69
CDY69354	Canola	nucleus	96.69	96.69
CDY45758	Canola	nucleus	82.64	82.64
CDY02217	Canola	nucleus	81.82	82.5
CDX87180	Canola	nucleus	77.27	76.33
AT5G23260.4	Thale cress	nucleus	78.51	70.9
CDY16841	Canola	nucleus	77.27	58.8
VIT_10s0042g00820.t01	Wine grape	nucleus	52.48	53.81
VIT_01s0011g01560.t01	Wine grape	nucleus	47.11	50.89
Solyc11g005120.1.1	Tomato	nucleus	48.35	49.16
KRG89112	Soybean	nucleus	49.17	48.57
KRH40895	Soybean	nucleus	48.76	48.36
GSMUA_Achr3P23580_001	Banana	nucleus	42.98	43.15
VIT_02s0025g02350.t01	Wine grape	nucleus	35.54	41.75
GSMUA_Achr2P02660_001	Banana	nucleus	40.08	40.42
Os04t0614100-00	Rice	nucleus	29.34	39.89
Zm00001d018587_P001	Maize	nucleus	27.27	39.05
CDY35823	Canola	nucleus	24.38	38.31
CDX92479	Canola	nucleus	23.97	37.66
CDX88846	Canola	nucleus	30.99	36.95
CDY60377	Canola	nucleus	30.99	36.95
CDY45099	Canola	nucleus	30.99	36.95
Os06t0667200-01	Rice	nucleus	33.06	36.2
Zm00001d015381_P001	Maize	nucleus	38.43	35.77
EES06346	Sorghum	nucleus	37.6	35.27
TraesCS6A01G158100.1	Wheat	nucleus	36.36	34.92
TraesCS6D01G147400.1	Wheat	nucleus	36.36	34.92
TraesCS6B01G186700.1	Wheat	nucleus	36.36	34.78
HORVU6Hr1G032220.7	Barley	nucleus	37.19	34.62
Os02t0170300-01	Rice	nucleus	36.78	34.23
CDY69833	Canola	nucleus	24.79	33.9
OQU82318	Sorghum	nucleus	35.54	33.46
TraesCS2B01G440900.1	Wheat	nucleus	34.71	33.2
TraesCS3D01G102700.1	Wheat	nucleus	31.41	33.19
Zm00001d018767_P001	Maize	nucleus	34.3	32.55
TraesCS3D01G090300.1	Wheat	nucleus	29.34	32.42
Zm00001d003168_P001	Maize	nucleus	32.23	32.37
KXG20558	Sorghum	nucleus	31.41	31.8
TraesCS1D01G441200.1	Wheat	nucleus	24.79	31.58
TraesCS3A01G090900.1	Wheat	nucleus	28.93	30.84
HORVU2Hr1G098930.3	Barley	nucleus	35.12	30.8
TraesCS3A01G090300.1	Wheat	nucleus	28.51	30.67
TraesCS2D01G418800.2	Wheat	nucleus	34.3	30.63
TraesCS2A01G422400.2	Wheat	nucleus	34.3	30.51
Zm00001d041587_P001	Maize	nucleus	16.94	30.37
TraesCS7A01G475000.1	Wheat	nucleus	28.1	30.22
TraesCS3B01G105700.2	Wheat	nucleus	28.1	29.96
CDX73487	Canola	nucleus	27.27	28.45
CDX76152	Canola	nucleus	26.03	28.12
Zm00001d033701_P001	Maize	nucleus	28.1	28.1
CDY13200	Canola	nucleus	25.62	27.68
Zm00001d020114_P001	Maize	nucleus	25.21	27.11
HORVU7Hr1G108280.4	Barley	nucleus, plastid	28.93	26.22
Zm00001d031591_P001	Maize	nucleus	30.58	25.52
HORVU7Hr1G108410.1	Barley	nucleus	22.73	25.23
TraesCS7B01G377700.1	Wheat	nucleus	23.55	25.22
Zm00001d047742_P001	Maize	nucleus	30.58	21.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HQB5	UniProt:A0A078HQB5	EnsemblPlants:CDY40800	ProteinID:CDY40800
ProteinID:CDY40800.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	GO:GO:0048316	EnsemblPlantsGene:GSBRNA2T00071718001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF257	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	InterPro:TT16-like	UniParc:UPI0004EB7C27	SEG:seg	:	:

Description

BnaC02g41690DBnaC02g41690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQB5]

Coordinates

chrLK032479:-:79491..82054

Molecular Weight (calculated)

28617.2 Da

IEP (calculated)

7.396

GRAVY (calculated)

-0.850

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENRTARQVT FSKRRSGVIK KAHELSVLCD AHIGLIVFSA TGKLYQHCTE PLTMPQLIDR YLQTNGLRLP DPNDNREEFC HEIEVLRRET
101: CKLELRQRIY RGHDLASIPP HELDELEQQL EHSVLKIRQR KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HGHRATTEFQ QAGIETKPGE YQQFLEQVQF
201: YNDHQQQPNS FLQLATLPSE IDLNYHLHLA QPNFQNDPMA NI

Best Arabidopsis Sequence Match ( AT5G23260.4 )
(BLAST)

001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.