CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018587_P001	Maize	nucleus	60.31	91.72
Zm00001d018767_P001	Maize	nucleus	89.88	90.59
Zm00001d003168_P001	Maize	nucleus	84.82	90.46
Os04t0614100-00	Rice	nucleus	53.31	76.97
Zm00001d041587_P001	Maize	nucleus	39.3	74.81
TraesCS2B01G440900.1	Wheat	nucleus	70.04	71.15
TraesCS2D01G418800.2	Wheat	nucleus	69.65	66.05
TraesCS2A01G422400.2	Wheat	nucleus	69.65	65.81
HORVU2Hr1G098930.3	Barley	nucleus	69.26	64.49
Zm00001d033701_P001	Maize	nucleus	57.98	61.57
Zm00001d020114_P001	Maize	nucleus	52.92	60.44
Zm00001d031591_P001	Maize	nucleus	57.98	51.38
GSMUA_Achr2P02660_001	Banana	nucleus	44.36	47.5
GSMUA_Achr3P23580_001	Banana	nucleus	43.97	46.89
Zm00001d047742_P001	Maize	nucleus	61.09	46.04
VIT_10s0042g00820.t01	Wine grape	nucleus	40.08	43.64
EES06346	Sorghum	nucleus	42.8	42.64
VIT_01s0011g01560.t01	Wine grape	nucleus	35.41	40.62
VIT_02s0025g02350.t01	Wine grape	nucleus	30.74	38.35
Bra013028.1-P	Field mustard	nucleus	35.41	37.92
CDY02217	Canola	nucleus	35.41	37.92
CDY45758	Canola	nucleus	35.41	37.6
CDX87180	Canola	nucleus	35.02	36.73
CDY40800	Canola	nucleus	33.46	35.54
Bra029365.1-P	Field mustard	nucleus	33.07	35.12
CDY69354	Canola	nucleus	33.07	35.12
KRH40895	Soybean	nucleus	32.68	34.43
AT5G23260.4	Thale cress	nucleus	35.41	33.96
KRG89112	Soybean	nucleus	32.3	33.88
Solyc11g005120.1.1	Tomato	nucleus	31.13	33.61
EES01864	Sorghum	nucleus	27.24	33.49
EER90370	Sorghum	nucleus	29.18	33.19
EES18254	Sorghum	nucleus	27.24	33.02
KXG20558	Sorghum	nucleus	30.35	32.64
KXG33296	Sorghum	nucleus	22.96	29.95
CDY16841	Canola	nucleus	34.63	27.99
Bra026507.1-P	Field mustard	nucleus	33.46	27.48

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8063965	UniProt:A0A1Z5REZ9	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlants:OQU82318	ProteinID:OQU82318
ProteinID:OQU82318.1	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF210	SMART:SM00432	EnsemblPlantsGene:SORBI_3006G213900	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A86F33	RefSeq:XP_002447090.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:56231368..56234212

Molecular Weight (calculated)

29791.8 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.687

Length

257 amino acids

Sequence
(BLAST)

001: MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP PWRIASIFDR YLKAPSTRFE EMDIQQKIIQ EMTRMKDERN
101: RLRMIMAQYM GEDLATFSVQ DLSNLEQQIE FSLYKVRLRK QELLDHQQLL EIRQREMHIP GEQSGYLCLM NQAIARGQQQ QQAQAGEMAG INQRPFPWWD
201: VGASGSGSQS QQQQLPGRDA AESSMTALQL SPQLHEYRLQ PRQPNLQQDA NVHGWLW

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.