Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45758 | Canola | nucleus | 74.25 | 82.23 |
| Bra013028.1-P | Field mustard | nucleus | 72.76 | 81.25 |
| CDY02217 | Canola | nucleus | 72.76 | 81.25 |
| CDY40800 | Canola | nucleus | 70.9 | 78.51 |
| CDY69354 | Canola | nucleus | 70.52 | 78.1 |
| Bra029365.1-P | Field mustard | nucleus | 70.52 | 78.1 |
| CDX87180 | Canola | nucleus | 70.52 | 77.14 |
| Bra026507.1-P | Field mustard | nucleus | 71.27 | 61.02 |
| CDY16841 | Canola | nucleus | 72.39 | 61.01 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 48.88 | 55.51 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 44.4 | 53.12 |
| KRH40895 | Soybean | nucleus | 43.66 | 47.95 |
| KRG89112 | Soybean | nucleus | 43.66 | 47.76 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 41.79 | 46.47 |
| Solyc11g005120.1.1 | Tomato | nucleus | 41.04 | 46.22 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 34.33 | 44.66 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 37.31 | 41.67 |
| Os04t0614100-00 | Rice | nucleus | 27.61 | 41.57 |
| Zm00001d018587_P001 | Maize | nucleus | 25.75 | 40.83 |
| Zm00001d015381_P001 | Maize | nucleus | 36.57 | 37.69 |
| EES06346 | Sorghum | nucleus | 35.82 | 37.21 |
| Os02t0170300-01 | Rice | nucleus | 35.45 | 36.54 |
| Os06t0667200-01 | Rice | nucleus | 29.85 | 36.2 |
| TraesCS6D01G147400.1 | Wheat | nucleus | 33.96 | 36.11 |
| TraesCS6A01G158100.1 | Wheat | nucleus | 33.96 | 36.11 |
| AT5G20240.1 | Thale cress | nucleus | 27.99 | 36.06 |
| TraesCS6B01G186700.1 | Wheat | nucleus | 33.96 | 35.97 |
| HORVU6Hr1G032220.7 | Barley | nucleus | 34.7 | 35.77 |
| OQU82318 | Sorghum | nucleus | 33.96 | 35.41 |
| TraesCS2B01G440900.1 | Wheat | nucleus | 32.84 | 34.78 |
| Zm00001d018767_P001 | Maize | nucleus | 32.84 | 34.51 |
| Zm00001d003168_P001 | Maize | nucleus | 30.97 | 34.44 |
| TraesCS1D01G441200.1 | Wheat | nucleus | 24.25 | 34.21 |
| TraesCS7A01G475000.1 | Wheat | nucleus | 28.36 | 33.78 |
| TraesCS3D01G102700.1 | Wheat | nucleus | 28.36 | 33.19 |
| HORVU2Hr1G098930.3 | Barley | nucleus | 33.58 | 32.61 |
| TraesCS3A01G090900.1 | Wheat | nucleus | 27.61 | 32.6 |
| TraesCS3A01G090300.1 | Wheat | nucleus | 27.24 | 32.44 |
| TraesCS3D01G090300.1 | Wheat | nucleus | 26.49 | 32.42 |
| TraesCS3B01G105700.2 | Wheat | nucleus | 27.24 | 32.16 |
| TraesCS2D01G418800.2 | Wheat | nucleus | 32.46 | 32.1 |
| TraesCS2A01G422400.2 | Wheat | nucleus | 32.46 | 31.99 |
| Zm00001d041587_P001 | Maize | nucleus | 15.67 | 31.11 |
| KXG20558 | Sorghum | nucleus | 27.61 | 30.96 |
| Zm00001d033701_P001 | Maize | nucleus | 26.12 | 28.93 |
| HORVU7Hr1G108280.4 | Barley | nucleus, plastid | 28.73 | 28.84 |
| TraesCS7B01G377700.1 | Wheat | nucleus | 23.88 | 28.32 |
| AT3G54340.1 | Thale cress | nucleus | 24.25 | 28.02 |
| Zm00001d020114_P001 | Maize | nucleus | 23.13 | 27.56 |
| HORVU7Hr1G108410.1 | Barley | nucleus | 22.39 | 27.52 |
| Zm00001d031591_P001 | Maize | nucleus | 29.1 | 26.9 |
| Zm00001d047742_P001 | Maize | nucleus | 29.1 | 22.87 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832390 | UniProt:A0A1P8BAR2 | ProteinID:AED93144.1 | EMBL:AJ318098 |
| ProteinID:ANM68676.1 | ArrayExpress:AT5G23260 | EnsemblPlantsGene:AT5G23260 | RefSeq:AT5G23260 | TAIR:AT5G23260 | RefSeq:AT5G23260-TAIR-G |
| EnsemblPlants:AT5G23260.4 | EMBL:AY141212 | ProteinID:BAB11181.1 | EMBL:BT030048 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008360 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019748 | GO:GO:0030154 | GO:GO:0045595 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048316 |
| GO:GO:0048481 | GO:GO:0051302 | GO:GO:0080060 | GO:GO:0080155 | GO:GO:2000029 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001119264.1 | RefSeq:NP_001330404.1 | RefSeq:NP_974823.1 |
| ProteinID:OAO92844.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF257 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | Symbol:TT16 | InterPro:TT16-like | UniParc:UPI0008491EB6 | SEG:seg |
Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
Coordinates
chr5:+:7835965..7838555
Molecular Weight (calculated)
31637.6 Da
IEP (calculated)
6.797
GRAVY (calculated)
-1.019
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIEEEGATH KRKKREMGRG KIEIKKIENQ TARQVTFSKR RTGLIKKTRE LSILCDAHIG LIVFSATGKL SEFCSEQNRM PQLIDRYLHT NGLRLPDHHD
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
101: DQEQLHHEME LLRRETCNLE LRLRPFHGHD LASIPPNELD GLERQLEHSV LKVRERKNEL MQQQLENLSR KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI
201: DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.