Factsheet for TraesCS1D01G441200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G090300.1	Wheat	nucleus	48.42	42.01
TraesCS3D01G102700.1	Wheat	nucleus	49.47	41.05
Os06t0667200-01	Rice	nucleus	41.58	35.75
KXG20558	Sorghum	nucleus	42.11	33.47
TraesCS3D01G401700.1	Wheat	nucleus	34.21	31.1
TraesCS3D01G284200.1	Wheat	nucleus	31.58	30.61
GSMUA_Achr3P23580_001	Banana	nucleus	38.42	30.29
VIT_01s0011g01560.t01	Wine grape	nucleus	35.26	29.91
TraesCS6D01G147400.1	Wheat	nucleus	38.42	28.97
GSMUA_Achr2P02660_001	Banana	nucleus	35.79	28.33
VIT_10s0042g00820.t01	Wine grape	nucleus	34.74	27.97
CDY45758	Canola	nucleus	35.26	27.69
VIT_02s0025g02350.t01	Wine grape	nucleus	30.0	27.67
Bra013028.1-P	Field mustard	nucleus	34.74	27.5
CDY02217	Canola	nucleus	34.74	27.5
TraesCS1D01G264500.1	Wheat	nucleus	31.05	27.06
CDX87180	Canola	nucleus	34.74	26.94
Solyc11g005120.1.1	Tomato	nucleus	32.63	26.05
CDY40800	Canola	nucleus	31.58	24.79
KRG89112	Soybean	nucleus	31.58	24.49
Bra029365.1-P	Field mustard	nucleus	31.05	24.38
CDY69354	Canola	nucleus	31.05	24.38
TraesCS6D01G120900.1	Wheat	nucleus	30.53	24.27
AT5G23260.4	Thale cress	nucleus	34.21	24.25
TraesCS7D01G380300.1	Wheat	nucleus	28.95	24.23
KRH40895	Soybean	nucleus	30.53	23.77
TraesCS2D01G418800.2	Wheat	nucleus	32.11	22.51
Bra026507.1-P	Field mustard	nucleus	34.74	21.09
CDY16841	Canola	nucleus	34.74	20.75

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS1D01G441200
EnsemblPlants:TraesCS1D01G441200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:486249990..486251682

Molecular Weight (calculated)

21257.2 Da

IEP (calculated)

5.845

GRAVY (calculated)

-0.484

Length

190 amino acids

Sequence
(BLAST)

001: MGRRGKLEVK RIVDDASRRV TFCKRRGTLL KKARELAVLC DDDVSLGLVV FSSTGKLAGD YCSPNTSWSD LIQRYEREST PSTQLQVQDT NQDGDHHQQL
101: LAEVARLRQE IDHLEGSLRR QTGEEDLLSS GVTAAELHDL QHHVGSALGK VRHRKVHLLE EEMLLATAAF LEVEVDMDME ASTSLQPTLP

Best Arabidopsis Sequence Match ( AT4G09960.2 )
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG

Arabidopsis Description

STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.